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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGTGGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCCAAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGCGGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACGTTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACG-GTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTCGGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCGTTTATTGTTGCGTTGCTTTTTTTAAGGC]
[+] EMBL BM581965 [CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGTGGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCCAAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGCGGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACGTTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACG GTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTG ]
[+] EMBL BM580082 [ ccgccCACGCGT CCGGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGAATGCTCGGTAAGCTACCGGGGCAACCAGGCGGC GGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTCGGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCGTTTATTGTTGCGTTGCTTTTTTTAAGGC]
consensusID : consensus_4047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC]
[+] EMBL BM593257 [CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4047#0 CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGT 60
consensus_4047#1 ------------------------------------------------------------
consensus_4047#0 GGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCC 120
consensus_4047#1 ------------------------------------------------------------
consensus_4047#0 AAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGC 180
consensus_4047#1 ------------------------------------------------------------
consensus_4047#0 GGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACG 240
consensus_4047#1 ------------------------------------------------------------
consensus_4047#0 TTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAA 300
consensus_4047#1 -------------------------------------------CCGCCCACGCGT-CCGA 16
* * *** ** *
consensus_4047#0 TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT 360
consensus_4047#1 TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT 76
************************************************************
consensus_4047#0 ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG 420
consensus_4047#1 ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG 136
************************************************************
consensus_4047#0 GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT 480
consensus_4047#1 GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT 196
************************************************************
consensus_4047#0 CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT 540
consensus_4047#1 CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT 256
************************************************************
consensus_4047#0 GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG 600
consensus_4047#1 GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG 316
************************************************************
consensus_4047#0 CAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC 660
consensus_4047#1 CAACCAGGCGGCGG-CGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC 375
************** *********************************************
consensus_4047#0 GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA 720
consensus_4047#1 GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA 435
************************************************************
consensus_4047#0 ATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTA 780
consensus_4047#1 ATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTA 495
********************** ********* ******* *******************
consensus_4047#0 TGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTC 840
consensus_4047#1 TGCCACCGTGGCACACTGGACTC------------------------------------- 518
***********************
consensus_4047#0 GGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCG 900
consensus_4047#1 ------------------------------------------------------------
consensus_4047#0 TTTATTGTTGCGTTGCTTTTTTTAAGGC 928
consensus_4047#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||