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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1048 fasta sequence
[GTTTACGTGGTGAGCAATTGCAGTACCTACTGCAAGATTGCTGAACTAACGGCAATATTGGCCACAGCTAACAAACCTATGATAATTATATGATTGCGTTGCGGTGAATGGCGCGTCGCGTGATATTTAAGGTACATTTATCATGCTTCAGTTTTTCAAACTCTTAGAATTTTATGTAGCGTTATTACGTACCCGACGTAGTAGGGTTGAGAAAAACCGTTGGCCACGTTCCAGTACATTTGTGTTAGCTAATCGATCGATCAATAGATCGAAGTTGTTTAACCTTTTTTGAGACGATTGCTTTGATAGCTTTCTTTTTTTTACGTTCGATCAGTAATATTTGGTAAAACAATGAATGGAAAATTTTAATGAAGAGAAGAAAATATCGTTCAAAATCTAGCCTCTAATATTAAACTACTATTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAAGGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAATTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGAAATTTGATTGAAAAGCATAACACGCTACGTTCGAGTTGATCGCGCACAACGCAACGCAGTGGTGTGTTAAAGTCTACTTACTACTTTATTGGTATCTCTTCTTTTAGATAAACAAAAAGAAAAACNACCCTCATTGACGCATGAATTTACATTTCAACTCAAAACAGTCAAACNATGCATGCAAAATGGGCGGGAAATAAAGTAGTGTGCAGATGCGGACAAGAGCTGCTAGTATAACGCATTGTAGCGGGAACACAGAGATGCGCTCGATCGAAGCACGGTACAGAAAATATGAGTTCATATGAGAGTTTTTTGATAGCTTTTGGACGGGTTTGAACGGTGACAGTGCGTTCGTGGTGGAAGTGTCGTGTTGTTATATATTCATACATATATTTTTGTACAAACNAAATCGAAAAAGAAGGGAAAAGATAATTGTTTGGCGATGTGGGTANGAA]
[+] EMBL BX627894 [GTTTACGTGGTGAGCAATTGCAGTACCTACTGCAAGATTGCTGAACTAACGGCAATATTGGCCACAGCTAACAAACCTATGATAATTATATGATTGCGTTGCGGTGAATGGCGCGTCGCGTGATATTTAAGGTACATTTATCATGCTTCAGTTTTTCAAACTCTTAGAATTTTATGTAGCGTTATTACGTACCCGACGTAGTAGGGTTGAGAAAAACCGTTGGCCACGTTCCAGTACATTTGTGTTAGCTAATCGATCGATCAATAGATCGAAGTTGTTTAACCTTTTTTGAGACGATTGCTTTGATAGCTTTCTTTTTTTTACGTTCGATCAGTAATATTTGGTAAAACAATGAATGGAAAATTTTAATGAAGAGAAGAAAATATCGTTCAAAATCTAGCCTCTAATATTAAACTACTATTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAAGGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAATTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGAAATTTGATTGAAAAGCATAACACGCTACGTTCGAGTTGATCGCGCACAACGCAACGCAGTGGTGTGTTAAAGTCTACTTACTACTTTATTGGTATCTCTTCTTTTAGATAAACAAAAAGAAAAACNACCCTCATTGACGCATGAATTTACATTTCAACTCAAAACAGTCAAACNATGCATGCAAAATGGGCGGGAAATAAAGTAGTGTGCAGAT ]
[+] EMBL BX621472 [ TTAACCTTTTTTGAGACGATTGCTTTGATAGCTTTCTTTTTTTTACGTTCGATCAGTAATATTTGGTAAAACAATGAATGGAAAATTTTAATGAAGAGAAGAAAATATCGTTCAAAATCTAGCCTCTAATATTAAACTACTATTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAAGGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAATTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGACATTTGATTGAAAAGCATAACACGCTACGTTCGAGTTGATCGTGCACAATGCAACGCAGTGGTGTGTTAAAGTCTACTTACTACTTTATTGTTATCTCTTCTTTTAGATAAACAAAAAGAAAAACAACCCTCATTGACGCATGAATTTACATTTCAACTCAAAACAGTCAAAC A ATGCAAAATGGGCGGTAAATAAAGTAGTGTGCAGATGCGGACAAGAGCTGCTAGTATAACGCATTGTAGCGGGAACACAGAGATGCGCTCGATCGAAGCACGGTACAGAAAATATGAGTTCATATGAGAGTTTTTTGATAGCTTTTGGACGGGTTTGAACGGTGACAGTGCGTTCGTGGTGGAAGTGTCGTGTTGTTATATATTCATACATATATTTTTGTACAAACNAAATCGAAAAAGAAGGGAAAAGATAATTGTTTGGCGATGTGGGTANGAA]
consensusID : consensus_4059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence
[AGANTCGCCACGAGGTATTAACTACTATTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAAGGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAATTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGAAATTTGATTGAAAAGCATAACACGCTACGTTCGAGTTGATCGCGCACAACGCAACGCAGTGGTGTGTTAAAGGTCTACTTACTACTTTATTGTTATCTCTTCTTTTTACGATTAACAAAAAGAAAAACAACCCTCATTGACGCATGTAATTTACATTTCAACTCAAAACAGTCAAACAATGCATGCAAAATGGGCGGTAAACTAAAGTAGTGTGCAGATGCGGACAAGAGCTGCTAGTATAACGCATTGTAGCGGAAACACAGAGCATGCGCACGATCGAAGCATGGTACCGAAAATATNGAGGTTCATATGAGAGTTTTTGATANGCTTTTTGGGACGGGTTNTTGAACGATGTGCCANTGCGTTCGTCGGGTGCAACGTTGTCCGCAGCTATCGTTCATCATATTCATACCATATATATTGAGAACAGAAGCAGAAAGTCGNAGAAACGAAAAGGGCACACACGCACTAACTTCGATGGGCGAATAGTGGGTCAGGAANATCCTGTCAGGCAGACAGAAACGTCGGTTAACATGAGCCCATCATTAANCCGGGAACCATTGATNGCCNGCNACACGG]
[+] EMBL BX466475 [AGANTCGCCACGAGGTATTAACTACTATTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAAGGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAATTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGAAATTTGATTGAAAAGCATAACACGCTACGTTCGAGTTGATCGCGCACAACGCAACGCAGTGGTGTGTTAAAGGTCTACTTACTACTTTATTGTTATCTCTTCTTTTTACGATTAACAAAAAGAAAAACAACCCTCATTGACGCATGTAATTTACATTTCAACTCAAAACAGTCAAACAATGCATGCAAAATGGGCGGTAAACTAAAGTAGTGTGCAGATGCGGACAAGAGCTGCTAGTATAACGCATTGTAGCGGAAACACAGAGCATGCGCACGATCGAAGCATGGTACCGAAAATATNGAGGTTCATATGAGAGTTTTTGATANGCTTTTTGGGACGGGTTNTTGAACGATGTGCCANTGCGTTCGTCGGGTGCAACGTTGTCCGCAGCTATCGTTCATCATATTCATACCATATATATTGAGAACAGAAGCAGAAAGTCGNAGAAACGAAAAGGGCACACACGCACTAACTTCGATGGGCGAATAGTGGGTCAGGAANATCCTGTCAGGCAGACAGAAACGTCGGTTAACATGAGCCCATCATTAANCCGGGAACCATTGATNGCCNGCNACACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4059#0 GTTTACGTGGTGAGCAATTGCAGTACCTACTGCAAGATTGCTGAACTAACGGCAATATTG 60
consensus_4059#1 ------------------------------------------------------------
consensus_4059#0 GCCACAGCTAACAAACCTATGATAATTATATGATTGCGTTGCGGTGAATGGCGCGTCGCG 120
consensus_4059#1 ------------------------------------------------------------
consensus_4059#0 TGATATTTAAGGTACATTTATCATGCTTCAGTTTTTCAAACTCTTAGAATTTTATGTAGC 180
consensus_4059#1 ------------------------------------------------------------
consensus_4059#0 GTTATTACGTACCCGACGTAGTAGGGTTGAGAAAAACCGTTGGCCACGTTCCAGTACATT 240
consensus_4059#1 ------------------------------------------------------------
consensus_4059#0 TGTGTTAGCTAATCGATCGATCAATAGATCGAAGTTGTTTAACCTTTTTTGAGACGATTG 300
consensus_4059#1 ------------------------------------------------------------
consensus_4059#0 CTTTGATAGCTTTCTTTTTTTTACGTTCGATCAGTAATATTTGGTAAAACAATGAATGGA 360
consensus_4059#1 ------------------------------------------------------------
consensus_4059#0 AAATTTTAATGAAGAGAAGAAAATATCGTTCAAAATCTAGCCTCTAATATTAAACTACTA 420
consensus_4059#1 ---------------------------------AGANTCGCCACGAGGTATTAACTACTA 27
* * *** * * * ********
consensus_4059#0 TTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAA 480
consensus_4059#1 TTTGGGAAAGCAAAGCCACTGCATCGCAAAAGATCAATGTTATTTATAGAAGAAGGAGAA 87
************************************************************
consensus_4059#0 GGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAA 540
consensus_4059#1 GGAAAAAACACTGAACATTTAAATGGTCCACACCAATGCAAAATGTACATATGCTCGAAA 147
************************************************************
consensus_4059#0 TTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGAAATTTGA 600
consensus_4059#1 TTCGACAACGGGGAGAGGATTGGTGATATTTGTCAAGTATTATTCACGAACGAAATTTGA 207
************************************************************
consensus_4059#0 TTGAAAAGCATAACACGCTACGTTCGAGTTGATCGCGCACAACGCAACGCAGTGGTGTGT 660
consensus_4059#1 TTGAAAAGCATAACACGCTACGTTCGAGTTGATCGCGCACAACGCAACGCAGTGGTGTGT 267
************************************************************
consensus_4059#0 TAAAG-TCTACTTACTACTTTATTGGTATCTCTTCTTTTA--GATAAACAAAAAGAAAAA 717
consensus_4059#1 TAAAGGTCTACTTACTACTTTATTGTTATCTCTTCTTTTTACGATTAACAAAAAGAAAAA 327
***** ******************* ************* *** **************
consensus_4059#0 CNACCCTCATTGACGCATG-AATTTACATTTCAACTCAAAACAGTCAAACNATGCATGCA 776
consensus_4059#1 CAACCCTCATTGACGCATGTAATTTACATTTCAACTCAAAACAGTCAAACAATGCATGCA 387
* ***************** ****************************** *********
consensus_4059#0 AAATGGGCGGGAAA-TAAAGTAGTGTGCAGATGCGGACAAGAGCTGCTAGTATAACGCAT 835
consensus_4059#1 AAATGGGCGGTAAACTAAAGTAGTGTGCAGATGCGGACAAGAGCTGCTAGTATAACGCAT 447
********** *** *********************************************
consensus_4059#0 TGTAGCGGGAACACAGAG-ATGCGCTCGATCGAAGCACGGTACAGAAAATATGA--GTTC 892
consensus_4059#1 TGTAGCGGAAACACAGAGCATGCGCACGATCGAAGCATGGTACCGAAAATATNGAGGTTC 507
******** ********* ****** *********** ***** ******** ****
consensus_4059#0 ATATGAGAGTTTTTTGATAGCTTTT--GGACGGGTTT--GAACG--GTGACAGTGCGTTC 946
consensus_4059#1 ATATGAGAGTTTTTGATANGCTTTTTGGGACGGGTTNTTGAACGATGTGCCANTGCGTTC 567
************** ****** ********* ***** *** ** *******
consensus_4059#0 GTGGTG-GAAGTGTCGT--GTTGTTAT--------ATATTCATAC-ATATATTTTTG--- 991
consensus_4059#1 GTCGGGTGCAACGTTGTCCGCAGCTATCGTTCATCATATTCATACCATATATATTGAGAA 627
** * * * * ** ** * * *** ********** ****** **
consensus_4059#0 TACAAACNAAATCGAAAAAGAAGGGAAAAGATAATTGTTTGGCGATGTGGGTANGAA--- 1048
consensus_4059#1 CAGAAGCAGAAAGTCGNAGAAACGAAAAGGGCACACACGCACTAACTTCGATGGGCGAAT 687
* ** * ** * ** * *** * * * * * * *
consensus_4059#0 ------------------------------------------------------------
consensus_4059#1 AGTGGGTCAGGAANATCCTGTCAGGCAGACAGAAACGTCGGTTAACATGAGCCCATCATT 747
consensus_4059#0 --------------------------------
consensus_4059#1 AANCCGGGAACCATTGATNGCCNGCNACACGG 779
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||