These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [GGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACGAATGTTGCTGGATCACTTTTCAGCACCACCACTAAAGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAAAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGATTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTGGGACAATCTATCGTTAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGTCGGAGGAGAAATATCTTGAAAAGATGCAACTATGGCGCGATCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTCGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCGCGGAGCGCTCCCAGCTGCTACGATCCTCGCTTGGAAGCGTTGCTCAATTTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATCGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGACAGCAAGCACGGCATTGANGNGGATCTGAATTTCAACAATTGCGTTGGGATTANGA] [+] EMBL BX625769 [GGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACGAATGTTGCTGGATCACTTTTCAGCACCACCACTAAAGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAAAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGATTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTGGGACAATCTATCGTTAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGTCGGAGGAGAAATATCTTGAAAAGATGCAACTATGGCGCGATCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTCGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCGCGGAGCGCTCCCAGCTGCTACGATCCTCGCTTGGAAGCGTTGCTCAATTTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATCGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGACAGCAAGCACGGCATTGANGNGGATCTGAATTTCAACAATTGCGTTGGGATTANGA] consensusID : consensus_4070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [GGCCAAGAATCGCCACGAGGTNGAGAACTGTTACGGGCACCAGTCTGTGCCGGTGTTTGGAGAACTGTTCGGTAACGCTAGCCATAGCCATCCGAACCCTATCCAATTCATAAATAGCCAGACGGCAGGAAGTTTTGGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACTAATGTTGCTGGATCTCTTTTCAGCACCACCACTAAGGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAANAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGAGTTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTTGGGACAAGTCTATCGTTAAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGGTCGGAACGAGAAATATCTTGGAANCGATTGGCAACGTATGGGCGNCGGATCCTTGGNGANTANTCCTCCGGGANTCCGAGGAAACAAGGGGCTTTTCCNCCGGAAAGGTANTAAGGCCCTTTNNATCATAGGGTTCAGGNCAAGGACACGGAGANCCTTCACNCGGNGCTTTNTGGGGGTAGGCNTGAAGCCANGGTTNTCACAG] [+] EMBL BX468244 [GGCCAAGAATCGCCACGAGGTNGAGAACTGTTACGGGCACCAGTCTGTGCCGGTGTTTGGAGAACTGTTCGGTAACGCTAGCCATAGCCATCCGAACCCTATCCAATTCATAAATAGCCAGACGGCAGGAAGTTTTGGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACTAATGTTGCTGGATCTCTTTTCAGCACCACCACTAAGGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAANAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGAGTTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTTGGGACAAGTCTATCGTTAAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGGTCGGAACGAGAAATATCTTGGAANCGATTGGCAACGTATGGGCGNCGGATCCTTGGNGANTANTCCTCCGGGANTCCGAGGAAACAAGGGGCTTTTCCNCCGGAAAGGTANTAAGGCCCTTTNNATCATAGGGTTCAGGNCAAGGACACGGAGANCCTTCACNCGGNGCTTTNTGGGGGTAGGCNTGAAGCCANGGTTNTCACAG] consensusID : consensus_4070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [AGGCAAGAATCCCGACGAGTGTACAGTCGGAAGAGAAATATCTTGCAAAGATGCACTATGGCGCGATCCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTTGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCAGCGGAGCGCTCCCAGCTGCTACGATACCTCGCTTGGAAGCGTTGCTCAAATTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATACGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGGACAGCAAGCACGGCNATTGAGGTGGATCTGAATTTCAACAATTGCGTTGGGATTAGGAATACGCATTTGTTGCACTGTTATTCGCAGATGGACCTGGCGCGTTAGACCGTTGGGTGTTGGTGGTAAAGTTGTGGGGCTCGGGATCTACAAGCATAAACGATGCTTAAAACATGACTTATATCGCAGCTANTCTCTGGTAATTGATAGGGTATTCATTTTCCTGGCAGTAACGGAACACAANGCNCACCCAGGTTCTTTCCAATGTTTGCATGCCTTTACAATCCCTGNACAAGTTTATGAACAANTCACTCGAGCGTTTC] [+] EMBL BX469068 [AGGCAAGAATCCCGACGAGTGTACAGTCGGAAGAGAAATATCTTGCAAAGATGCACTATGGCGCGATCCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTTGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCAGCGGAGCGCTCCCAGCTGCTACGATACCTCGCTTGGAAGCGTTGCTCAAATTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATACGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGGACAGCAAGCACGGCNATTGAGGTGGATCTGAATTTCAACAATTGCGTTGGGATTAGGAATACGCATTTGTTGCACTGTTATTCGCAGATGGACCTGGCGCGTTAGACCGTTGGGTGTTGGTGGTAAAGTTGTGGGGCTCGGGATCTACAAGCATAAACGATGCTTAAAACATGACTTATATCGCAGCTANTCTCTGGTAATTGATAGGGTATTCATTTTCCTGGCAGTAACGGAACACAANGCNCACCCAGGTTCTTTCCAATGTTTGCATGCCTTTACAATCCCTGNACAAGTTTATGAACAANTCACTCGAGCGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4070#0 ------------------------------------------------------------ consensus_4070#1 GGCCAAGAATCGCCACGAGGTNGAGAACTGTTACGGGCACCAGTCTGTGCCGGTGTTTGG 60 consensus_4070#2 ------------------------------------------------------------ consensus_4070#0 ------------------------------------------------------------ consensus_4070#1 AGAACTGTTCGGTAACGCTAGCCATAGCCATCCGAACCCTATCCAATTCATAAATAGCCA 120 consensus_4070#2 -------------------------AGGCA--AGAATCC----CGACGAGTGTACAGTCG 29 consensus_4070#0 ----------------GGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCT-- 42 consensus_4070#1 GACGGCAGGAAGTTTTGGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCT-- 178 consensus_4070#2 GAAGAGAAATATCTTGCAAAGATGC---ACTATGGCGC-GATCCTGTATATCTCGATCAA 85 *** ** ** *** * * *** * * consensus_4070#0 GCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAG 102 consensus_4070#1 GCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAG 238 consensus_4070#2 GAAAGGCTTTCCGAAGTATAGCCTTTATCTG-GTCGGCAGCACGATCTCTGGCTTTGGTG 144 * ** *** * * * * **** *** * * * * * ** * consensus_4070#0 TCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACC 162 consensus_4070#1 TCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACC 298 consensus_4070#2 CTGA--CAGTTCAGATGT--GGACATGTGCCTTGTTTCAGCG-GAGCGCTCCCAGCTGCT 199 ** *** * ** * * * ** * ** * * ** * ** * * consensus_4070#0 AACACACATTACC-GGTCGCACCGATCGA-TGGGAACGAATGTTGCTGGATCACTTTTCA 220 consensus_4070#1 AACACACATTACC-GGTCGCACCGATCGA-TGGGAACTAATGTTGCTGGATCTCTTTTCA 356 consensus_4070#2 ACGATACCTCGCTTGGAAGCGTTGCTCAAATTGTCACTGGTGAAGGAATATTTCATGAGT 259 * * ** * * ** ** * ** * * * ** ** * ** * * consensus_4070#0 GCACCACCACTAAAGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAAAA-TAATCAT--G 277 consensus_4070#1 GCACCACCACTAAGGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAANAATAATCAT--G 414 consensus_4070#2 ATGCCATACGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCG 319 *** * * * * ** * * * * ** * *** ** *** * * consensus_4070#0 TTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGA-TTTTCAATACACACCGGCA 336 consensus_4070#1 TTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGAGTTTTCAATACACACCGGCA 474 consensus_4070#2 CTTTCAAGGACAGCAAGCA-CGGCNATTGAGGTGGATCTGAATTTCAACA-ATTGCGTTG 377 ** ** * * ** ** ** * * ****** * * ** consensus_4070#0 GATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACT 396 consensus_4070#1 GATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACT 534 consensus_4070#2 GG-------ATTAGGAATACGCATT-TGTTGCACTGT--TATTCGCAGATGGACCTGGCG 427 * *** * * ** ** *** * * ** * * *** * * * ** * consensus_4070#0 GATGGCAGCATTT-GGGACAA-TCTATCGTTA-GCGATCTGGGAAAAGTTCACTGCTGCC 453 consensus_4070#1 GATGGCAGCATTTTGGGACAAGTCTATCGTTAAGCGATCTGGGAAAAGTTCACTGCTGCC 594 consensus_4070#2 CGTTAGACCGTTGGGTGTTGGTGGTAAAGTTGTGGGGCTCGGGA----TCTACAAGCATA 483 * * * ** * * ** *** * * **** * ** consensus_4070#0 CAGCA-G-TCGGAG-GAGAAATATCTTGAAAAGATGCAACTATGGCGCGATCTGTATATC 510 consensus_4070#1 CAGCA-GGTCGGAACGAGAAATATCTTGGAANCGATTGGCAACG-TATGGGCGNCGGATC 652 consensus_4070#2 AACGATGCTTAAAACATGACTTATATCGCAGCTANTCTCTGGTA--ATTGATAGGGTATT 541 * * * * * ** *** * * * ** consensus_4070#0 TCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGC 570 consensus_4070#1 CT--TGGNGANTANTCCTCCGGGANTCCGAGGAAACAAGG--GGCTTTTCCNCCGGAAAG 708 consensus_4070#2 CATTTTCCTGGCAGTA--ACGGAACACAANGCNCACCCAG---GTTCTTTCC-----AAT 591 * ** * * * consensus_4070#0 TTCGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCGCGGAGCGCTCCCAGCTGC 630 consensus_4070#1 GT-ANTAAGGCCCTTTNNATCATAGGGTTCAGGNCAAGGACACGGAGANCCTTCACNCGG 767 consensus_4070#2 GT-TTGCATGCCTTTACAATC-------CCTGNACAAGTTTATGAACAAN--TCACTCGA 641 * * * * * * * ** * consensus_4070#0 TACGATCCTCGCTTGGAAGCGTTGCTCAATTTGTCACTGGTGAAGGAATATTTCATGAGT 690 consensus_4070#1 NGCTTTNTGGGGGTAGGCNTGAAGCCANGGTTNTCACAG--------------------- 806 consensus_4070#2 GCGTTTC----------------------------------------------------- 648 * consensus_4070#0 ATGCCATCGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGC 750 consensus_4070#1 ------------------------------------------------------------ consensus_4070#2 ------------------------------------------------------------ consensus_4070#0 TTTCAAGACAGCAAGCACGGCATTGANGNGGATCTGAATTTCAACAATTGCGTTGGGATT 810 consensus_4070#1 ------------------------------------------------------------ consensus_4070#2 ------------------------------------------------------------ consensus_4070#0 ANGA 814 consensus_4070#1 ---- consensus_4070#2 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||