cluster # 4074

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Anopheles gambiae
cluster # 4074 cluster # 4074 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4074#0 length = 891 sequences # 2

consensus_4074#1 length = 729 sequences # 1

consensusID : consensus_4074#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 891
fasta sequence

                              [AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAGTTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGTTCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTCGTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTTATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTTTACTAATACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCAACGCTGCCATTACGGTTTGCGACAGCCTGGGTTTGTTCCTTTTTCCCGCATCACGT]

[+] EMBL BX613516             [AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAGTTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGTTCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTCGTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTTATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTTTACTAATACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACG                                                          ]
[+] EMBL BX616691             [                                                                                                                                                                                                                                                                                                                  TACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCAACGCTGCCATTACGGTTTGCGACAGCCTGGGTTTGTTCCTTTTTCCCGCATCACGT]




>consensus_4074#0
AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAG
TTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGT
TCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTC
GTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTT
ATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTT
TACTAATACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACC
ATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAA
TAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTA
AAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAA
ACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGG
TACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCT
ACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATG
TTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGA
ACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCAACGCT
GCCATTACGGTTTGCGACAGCCTGGGTTTGTTCCTTTTTCCCGCATCACGT

consensusID : consensus_4074#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [CAGAATCCCCACGAGNNCATACTCAAACACACAAACAAACACATTAAAATGCACCTTTCATTAATTTGATTTTCCATTTTCTCATTTTATATACCATTTTATATACCTTCATCATCATCAAAAAGTCCATTTCGCGTGCCTCTCAAATAGCTTCACAATCGATCAGATCCAACACGATTAATGGTATAGAAGGAAAAAGCAACTCTAAAAAGCTAAAAGCCGCACACATAAATCGAAATAATCGCTAACGATGCAAACAATGGAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGGTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACATGCCTTACACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTGACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCANAAGCGAACGCAACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTTGGTGTCCTTTGNTCCCGCATCACGTGATGCTATAAGTAACGGGTACGGTTAGCGTTTGACACCCGAAGTTTACTGTGTACGGTTTAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGTACNATGAGT]

[+] EMBL BX468262             [CAGAATCCCCACGAGNNCATACTCAAACACACAAACAAACACATTAAAATGCACCTTTCATTAATTTGATTTTCCATTTTCTCATTTTATATACCATTTTATATACCTTCATCATCATCAAAAAGTCCATTTCGCGTGCCTCTCAAATAGCTTCACAATCGATCAGATCCAACACGATTAATGGTATAGAAGGAAAAAGCAACTCTAAAAAGCTAAAAGCCGCACACATAAATCGAAATAATCGCTAACGATGCAAACAATGGAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGGTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACATGCCTTACACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTGACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCANAAGCGAACGCAACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTTGGTGTCCTTTGNTCCCGCATCACGTGATGCTATAAGTAACGGGTACGGTTAGCGTTTGACACCCGAAGTTTACTGTGTACGGTTTAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGTACNATGAGT]




>consensus_4074#1
CAGAATCCCCACGAGNNCATACTCAAACACACAAACAAACACATTAAAATGCACCTTTCA
TTAATTTGATTTTCCATTTTCTCATTTTATATACCATTTTATATACCTTCATCATCATCA
AAAAGTCCATTTCGCGTGCCTCTCAAATAGCTTCACAATCGATCAGATCCAACACGATTA
ATGGTATAGAAGGAAAAAGCAACTCTAAAAAGCTAAAAGCCGCACACATAAATCGAAATA
ATCGCTAACGATGCAAACAATGGAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATA
ATCCGAATGGTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACAT
GCCTTACACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACC
GAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCC
GGCTCACTATCGTGAAATTGACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTA
AAGATCGCTTCANAAGCGAACGCAACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTT
GGTGTCCTTTGNTCCCGCATCACGTGATGCTATAAGTAACGGGTACGGTTAGCGTTTGAC
ACCCGAAGTTTACTGTGTACGGTTTAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGT
ACNATGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4074#0      AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAG 60
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      TTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGT 120
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      TCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTC 180
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      GTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTT 240
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      ATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTT 300
consensus_4074#1      -------------------------------CAGAATCCCCACGAGNNCATACTCAAACA 29
                                                      ** *             *   * *    

consensus_4074#0      TACTAATACG-ACACGAAACT-CAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTA 358
consensus_4074#1      CACAAACAAACACATTAAAATGCACCTTTCATTAATTTGATTTTCCATTTTCTCATTTTA 89
                       ** ** *   ***  *** * **  ***   ****   *  ** ****   *   ****

consensus_4074#0      CCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCA 418
consensus_4074#1      ----TATACCATTTTATATACCTTCATCATCATCAAAAAGTCCATTTCGCGTGCCTCTCA 145
                          * *  ******************* ** ******************** *******

consensus_4074#0      AATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTC 478
consensus_4074#1      AATAGCTTCACAATCGATCAGATCCAACACGATTAATGGTATAGAAGGAAAAAGCAACTC 205
                      ******** ************* ************************** **********

consensus_4074#0      TAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAA 538
consensus_4074#1      TAAAAAGCTAAAAGCCGCACACATAAATCGAAATAATCGCTAACGATGCAAACAATGGAA 265
                      ***** ******** ****************** **************************

consensus_4074#0      AAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAA 598
consensus_4074#1      AA-CGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGGTGATACAAGAACAA 324
                      ** ****************************************** **************

consensus_4074#0      GGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACA--AACT 656
consensus_4074#1      GGTACAATCACTATATACGCTATTTACTATTTACATGCCTTACACACACACACACAAACT 384
                      *********************************** ******************  ****

consensus_4074#0      CTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTA 716
consensus_4074#1      CTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTA 444
                      ************************************************************

consensus_4074#0      AATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATT-ACGC 775
consensus_4074#1      AATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTGACGC 504
                      ******************************************************* ****

consensus_4074#0      GCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCA 835
consensus_4074#1      GCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCANAAGCGAACGCA 564
                      ************************************************ ***********

consensus_4074#0      ACGCTGCCA--TTACGGTTTGCGACAGCCTGGGTTTG---TTCCTTTTTCCCGCATCACG 890
consensus_4074#1      ACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTTGGTGTCCTTTGNTCCCGCATCACG 624
                      ******     ************ *************   * * **  ************

consensus_4074#0      T----------------------------------------------------------- 891
consensus_4074#1      TGATGCTATAAGTAACGGGTACGGTTAGCGTTTGACACCCGAAGTTTACTGTGTACGGTT 684
                      *                                                           

consensus_4074#0      ---------------------------------------------
consensus_4074#1      TAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGTACNATGAGT 729