cluster # 4081

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Anopheles gambiae
cluster # 4081 cluster # 4081 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4081#0 length = 702 sequences # 1

consensus_4081#1 length = 634 sequences # 1
consensus_4081#2 length = 627 sequences # 1

consensusID : consensus_4081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGCCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCGCTGCCACCGAACGCGATGGGCGTGTCGGATTACGGTGACGTGGCGATGAGGCTGTTCTCCTTTCTGCTGCAGAACGACGACATGCCGCTACTGTTTACCGACGAGACCGATGTGCCCCGGGTGGAAAGCATGCTGGAGCACATTCTGAGCGACCATCTCAGCGAGATTGAGCTGCGCATCTGCCCGCTGGCGGAGCTGTTCTTCCGGCTGAAGCAAAACGTCGAGCTGTACATGATGGACCAGACCACCTTCCCGTCCGTGTACATTGCGCAGCAAATCATCACCAAGGACGTGTACGACTACACCAAGGGCATCAGCTGCGACTACCACGAGGAGAAGGACAACGTGCTGTACTGCCCGCTGTCCCGGTGCATCCGCTGGGCGTACATCATCTCGGATAACTGCTGCCAGGACATGGGCATCGAGCCGATTCCCGGGAAGCATGTGCCGCTGAACGCCAACACCAACCCGACC]

[+] EMBL BM590198             [CCGCCCACGCGTCCGCCCACGCGTCCGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGCCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCGCTGCCACCGAACGCGATGGGCGTGTCGGATTACGGTGACGTGGCGATGAGGCTGTTCTCCTTTCTGCTGCAGAACGACGACATGCCGCTACTGTTTACCGACGAGACCGATGTGCCCCGGGTGGAAAGCATGCTGGAGCACATTCTGAGCGACCATCTCAGCGAGATTGAGCTGCGCATCTGCCCGCTGGCGGAGCTGTTCTTCCGGCTGAAGCAAAACGTCGAGCTGTACATGATGGACCAGACCACCTTCCCGTCCGTGTACATTGCGCAGCAAATCATCACCAAGGACGTGTACGACTACACCAAGGGCATCAGCTGCGACTACCACGAGGAGAAGGACAACGTGCTGTACTGCCCGCTGTCCCGGTGCATCCGCTGGGCGTACATCATCTCGGATAACTGCTGCCAGGACATGGGCATCGAGCCGATTCCCGGGAAGCATGTGCCGCTGAACGCCAACACCAACCCGACC]




>consensus_4081#0
CCGCCCACGCGTCCGCCCACGCGTCCGCAAGAGTTTTACTTCATTTCCATGGCCTACTTC
TGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGCCTC
GAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGG
ATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCGCTGCCACCGAAC
GCGATGGGCGTGTCGGATTACGGTGACGTGGCGATGAGGCTGTTCTCCTTTCTGCTGCAG
AACGACGACATGCCGCTACTGTTTACCGACGAGACCGATGTGCCCCGGGTGGAAAGCATG
CTGGAGCACATTCTGAGCGACCATCTCAGCGAGATTGAGCTGCGCATCTGCCCGCTGGCG
GAGCTGTTCTTCCGGCTGAAGCAAAACGTCGAGCTGTACATGATGGACCAGACCACCTTC
CCGTCCGTGTACATTGCGCAGCAAATCATCACCAAGGACGTGTACGACTACACCAAGGGC
ATCAGCTGCGACTACCACGAGGAGAAGGACAACGTGCTGTACTGCCCGCTGTCCCGGTGC
ATCCGCTGGGCGTACATCATCTCGGATAACTGCTGCCAGGACATGGGCATCGAGCCGATT
CCCGGGAAGCATGTGCCGCTGAACGCCAACACCAACCCGACC

consensusID : consensus_4081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CCGGGTCAATTCCTGTTGAATTCACAGAAGAGGCAGTTGCTATCGGTGTACAACATTTACTAAACTCATTTACCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTATGCTCGACTACAAGAAGCGCGAGGAGGCCAAGGGACGAAAGTTCAGCGGCCTGGATCAGGTGGCACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGCGTGAACCGTACAACGTGCAGGCGAAGCAGGACGTGTTAAACACGAGCGGTGGCAAGGGCAAGATAACCAACATTGGCATACCGATCAGCGAAATTACGCAGGAAAAACGCGACCGGGAGAGCAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAATGCTGCATCGAAAAATGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCG]

[+] EMBL BM587171             [CCGGGTCAATTCCTGTTGAATTCACAGAAGAGGCAGTTGCTATCGGTGTACAACATTTACTAAACTCATTTACCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTATGCTCGACTACAAGAAGCGCGAGGAGGCCAAGGGACGAAAGTTCAGCGGCCTGGATCAGGTGGCACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGCGTGAACCGTACAACGTGCAGGCGAAGCAGGACGTGTTAAACACGAGCGGTGGCAAGGGCAAGATAACCAACATTGGCATACCGATCAGCGAAATTACGCAGGAAAAACGCGACCGGGAGAGCAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAATGCTGCATCGAAAAATGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCG]




>consensus_4081#1
CCGGGTCAATTCCTGTTGAATTCACAGAAGAGGCAGTTGCTATCGGTGTACAACATTTAC
TAAACTCATTTACCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTT
CTTTTATTTTATGCTCGACTACAAGAAGCGCGAGGAGGCCAAGGGACGAAAGTTCAGCGG
CCTGGATCAGGTGGCACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGCG
TGAACCGTACAACGTGCAGGCGAAGCAGGACGTGTTAAACACGAGCGGTGGCAAGGGCAA
GATAACCAACATTGGCATACCGATCAGCGAAATTACGCAGGAAAAACGCGACCGGGAGAG
CAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAATGCTGCATCGAAAAA
TGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACAC
TGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCTCGAGGGTGGCGTAAA
GGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGC
GCAGCGGCACGCCGAGGAGGACCACCAGCTGCCG

consensusID : consensus_4081#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CCGCCCACGCGTCCGGCAGTTGCTATCGGTGTACAACATTTACTAAACTCATTTACCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTATGCTCGACTACAAGAAGCGCGAGGAGGCCAAGGGACGAAAGTTCAGCGGCCTGGATCAGGTGGCACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGCGTGAACCGTACAACGTGCAGGCGAAGCAGGACGTGTTAAACACGAGCGGTGGCAAGGGCAAGATAACCAACATTGGCATACCGATCAGCGAAATTACGCAGGAAAAACGCGACCGGGAGAGCAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAATGCTGCATCGAAAAATGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCGCTGCCACCGA]

[+] EMBL BM649243             [CCGCCCACGCGTCCGGCAGTTGCTATCGGTGTACAACATTTACTAAACTCATTTACCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTATGCTCGACTACAAGAAGCGCGAGGAGGCCAAGGGACGAAAGTTCAGCGGCCTGGATCAGGTGGCACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGCGTGAACCGTACAACGTGCAGGCGAAGCAGGACGTGTTAAACACGAGCGGTGGCAAGGGCAAGATAACCAACATTGGCATACCGATCAGCGAAATTACGCAGGAAAAACGCGACCGGGAGAGCAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAATGCTGCATCGAAAAATGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCGCTGCCACCGA]




>consensus_4081#2
CCGCCCACGCGTCCGGCAGTTGCTATCGGTGTACAACATTTACTAAACTCATTTACCGCA
AACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTATGCTCG
ACTACAAGAAGCGCGAGGAGGCCAAGGGACGAAAGTTCAGCGGCCTGGATCAGGTGGCAC
CCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGCGTGAACCGTACAACGTGC
AGGCGAAGCAGGACGTGTTAAACACGAGCGGTGGCAAGGGCAAGATAACCAACATTGGCA
TACCGATCAGCGAAATTACGCAGGAAAAACGCGACCGGGAGAGCAAAGCGGAACGGCTGA
AAAAGCTCGTCAGCACGCTGGTGATGAATGCTGCATCGAAAAATGTGCTTGAAAAGCAAG
AGTTTTACTTCATTTCCATGGCCTACTTCTGTCGGACGAACACTGGCGTCCATCTGCCGG
CCGAGCTGGCCGTCGTGCGGTACAGTCTCGAGGGTGGCGTAAAGGACAAGCTCCACATGT
TCATCAATCCGGGCCGGCTGCCGATCGGGATGGCGTACGATGCGCAGCGGCACGCCGAGG
AGGACCACCAGCTGCCGCTGCCACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4081#1      -----------------------------------------------CCGGGTCAATTCC 13
consensus_4081#2      ------------------------------------------------------------
consensus_4081#0      CCGCCCACGCGTCCGCCCACGCGTCCGCAAGAGTTTTACTTCATTTCCATGGCCTACTTC 60
                                                                                  

consensus_4081#1      TGTTGAATTCACAGAAGAGGCAGT-TGCTATCGGTGTACAACATTTACTAAACTCATTTA 72
consensus_4081#2      ----CCGCCCACGCGTCCGGCAGT-TGCTATCGGTGTACAACATTTACTAAACTCATTTA 55
consensus_4081#0      TGTCGGACGAACACTGGCGTCCATCTGCCGGCCGAGC-TGGCCGTCGTGCGGTACAGCCT 119
                                **      * *  * ***   * * *     *  *         **    

consensus_4081#1      CCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTAT 132
consensus_4081#2      CCGCAAACCCACACATCGAAAAACAAAAATGCCGAAAAAGAACGGTTTCTTTTATTTTAT 115
consensus_4081#0      CGAGGGTGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGG 179
                      *        *  * *    **     * ***   *  **    **     *     *   

consensus_4081#1      GCTCGACTACAAGAAGCGCGAGGAGGCCAAGG--GACGA--AAGTTCAGCGGCC--TGGA 186
consensus_4081#2      GCTCGACTACAAGAAGCGCGAGGAGGCCAAGG--GACGA--AAGTTCAGCGGCC--TGGA 169
consensus_4081#0      GATGGCGTACGATGCGCAGCGGCACGCCGAGGAGGACCACCAGCTGCCGCTGCCACCGAA 239
                      * * *  *** *   **    * * *** ***  *** *  *  * * ** ***   * *

consensus_4081#1      TCAGGTGG---CACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGC-GTG 242
consensus_4081#2      TCAGGTGG---CACCCATTGCCGGCGAAGTATGGAAGAAAATGAACGCCCAGCAGC-GTG 225
consensus_4081#0      CGCGATGGGCGTGTCGGATTACGGTGACGTGGCGATGAGGCTGTTCTCCTTTCTGCTGCA 299
                         * ***      *   *  *** ** **   ** **   **  * **   * ** *  

consensus_4081#1      AACCGTACAACGTGCAGGCGAAGCAG---GACGTGTTAAACACGAGCGGTGGCAAGGGCA 299
consensus_4081#2      AACCGTACAACGTGCAGGCGAAGCAG---GACGTGTTAAACACGAGCGGTGGCAAGGGCA 282
consensus_4081#0      GAACG-ACGACATGCCGCTACTGTTTACCGACGAGACCGATGTGCCCCGGGTGGAAAGCA 358
                       * ** ** ** *** *     *      **** *    *   *  * * *   *  ***

consensus_4081#1      AGATAACCAACATT---GGCATACCGATCAGCGAAATTACGCAGGAAAAACGCG-ACCGG 355
consensus_4081#2      AGATAACCAACATT---GGCATACCGATCAGCGAAATTACGCAGGAAAAACGCG-ACCGG 338
consensus_4081#0      TGCTGGAGCACATTCTGAGCGACCATCTCAGCGAGATTGAGCTGCGCATCTGCCCGCTGG 418
                       * *     *****    **   *   ******* ***  ** *   *   **   * **

consensus_4081#1      GAGAGCAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAAT---GCTGCA 412
consensus_4081#2      GAGAGCAAAGCGGAACGGCTGAAAAAGCTCGTCAGCACGCTGGTGATGAAT---GCTGCA 395
consensus_4081#0      CGGAGCTGTTCTTC-CGGCTGAAGCAAAACGTCGAGCTGTACATGATGGACCAGACCACC 477
                        ****    *    ********  *   ****     *    ***** *     *  * 

consensus_4081#1      TCGAAAAATGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGG 472
consensus_4081#2      TCGAAAAATGTGCTTGAAAAGCAAGAGTTTTACTTCATTTCCATGGCCTACTTCTGTCGG 455
consensus_4081#0      TTCCCGTCCGTGTACATTGCGCAGCAAATCATCACCAAGGACGTG---TACGACTACACC 534
                      *        ***        ***  *  *   *  **    * **   ***  **     

consensus_4081#1      ACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCT-CGAGGG 531
consensus_4081#2      ACGAACACTGGCGTCCATCTGCCGGCCGAGCTGGCCGTCGTGCGGTACAGTCT-CGAGGG 514
consensus_4081#0      AAGGGCATCAGCTGCGACTACCACGAGGAGAAGGACAACGTGCTGTACTGCCCGCTGTCC 594
                      * *  **   **  * *    *  *  ***  ** *  ***** **** * *  *     

consensus_4081#1      TGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGC 591
consensus_4081#2      TGGCGTAAAGGACAAGCTCCACATGTTCATCAATCCGGGCCGGCTGCCGATCGGGATGGC 574
consensus_4081#0      CGGTGCATCCGCTGGGCGT-ACATCATCTCGGATAACTGCTGCCAGGACATGGGCATCGA 653
                       ** * *   *    **   ****  **    **    ** * * *   ** ** ** * 

consensus_4081#1      GTACGATGCGCAGCGGCACG--CCGAGGAGGACCACCAGCTGCCG---------- 634
consensus_4081#2      GTACGATGCGCAGCGGCACG--CCGAGGAGGACCACCAGCTGCCGCTGCCACCGA 627
consensus_4081#0      GCCGATTCCCGGGAAGCATGTGCCGCTGAACGCCAACACCAACCCGACC------ 702
                      *     * *   *  *** *  ***  **   *** ** *  **