cluster # 4089

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Anopheles gambiae
cluster # 4089 cluster # 4089 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4089#0 length = 666 sequences # 1

consensus_4089#1 length = 579 sequences # 1
consensus_4089#2 length = 444 sequences # 1

consensusID : consensus_4089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTGCGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAGTGCACTGAGAGTCCCGTAAATTTGAAAGAAATGTCCGTTGTCAGCTTAAACAGAATGTTCCGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGGCTGCTGATCGATGTGATACTGATAGTGAAATATGCCGACTGTCCCAGTACCGGTGGCGGATCAAGCTGGCTCTGCAAACGGAACGGCGACGGCTATGATGTTGAGGTGCCAAATGCAGCTCGCCAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATCCCATCGTGGACGCGGAGGAGATTGACACCAACTCGAACAACTTCGGTGACCCGGGCGGCTACGGTGGCGGCGGCGGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTACCGGCCGCAGGAGCTGAAGAAG]

[+] EMBL BM589651             [CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTGCGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAGTGCACTGAGAGTCCCGTAAATTTGAAAGAAATGTCCGTTGTCAGCTTAAACAGAATGTTCCGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGGCTGCTGATCGATGTGATACTGATAGTGAAATATGCCGACTGTCCCAGTACCGGTGGCGGATCAAGCTGGCTCTGCAAACGGAACGGCGACGGCTATGATGTTGAGGTGCCAAATGCAGCTCGCCAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATCCCATCGTGGACGCGGAGGAGATTGACACCAACTCGAACAACTTCGGTGACCCGGGCGGCTACGGTGGCGGCGGCGGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTACCGGCCGCAGGAGCTGAAGAAG]




>consensus_4089#0
CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGT
TTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGT
TGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTG
CGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAG
TGCACTGAGAGTCCCGTAAATTTGAAAGAAATGTCCGTTGTCAGCTTAAACAGAATGTTC
CGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGGCTG
CTGATCGATGTGATACTGATAGTGAAATATGCCGACTGTCCCAGTACCGGTGGCGGATCA
AGCTGGCTCTGCAAACGGAACGGCGACGGCTATGATGTTGAGGTGCCAAATGCAGCTCGC
CAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATCCCATCGTGGACGCG
GAGGAGATTGACACCAACTCGAACAACTTCGGTGACCCGGGCGGCTACGGTGGCGGCGGC
GGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTACCGGCCGCAGGAGCTG
AAGAAG

consensusID : consensus_4089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CCGCCCACGCGTCCGGTGCCGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCGTGTCGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAGCAAAAGTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACACAACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTGCAGTGTGTTTGTTTTGTACGTAAATCGTGTGTATATTAGTTTCGCTGTGCCTATATGAAGTATGAAATGTGTAACTATGTTACTAGTTGAAGTGCAATAATCGTTAGCAGTATTGATGTGCCGTAGCAGAATCTCAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGCTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTGCACGTGTGCGCGTAGTGAATCTGCGTGAAGGTAGATTCCGGTTCATCACTGCTCCTCCG]

[+] EMBL BM656281             [CCGCCCACGCGTCCGGTGCCGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCGTGTCGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAGCAAAAGTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACACAACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTGCAGTGTGTTTGTTTTGTACGTAAATCGTGTGTATATTAGTTTCGCTGTGCCTATATGAAGTATGAAATGTGTAACTATGTTACTAGTTGAAGTGCAATAATCGTTAGCAGTATTGATGTGCCGTAGCAGAATCTCAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGCTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTGCACGTGTGCGCGTAGTGAATCTGCGTGAAGGTAGATTCCGGTTCATCACTGCTCCTCCG]




>consensus_4089#1
CCGCCCACGCGTCCGGTGCCGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCG
TGTCGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAG
CAAAAGTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACACA
ACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTGC
AGTGTGTTTGTTTTGTACGTAAATCGTGTGTATATTAGTTTCGCTGTGCCTATATGAAGT
ATGAAATGTGTAACTATGTTACTAGTTGAAGTGCAATAATCGTTAGCAGTATTGATGTGC
CGTAGCAGAATCTCAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTGCGCAGGCTGT
GTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGCTA
CCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTGCACGTGTGCGCGTAGTGAAT
CTGCGTGAAGGTAGATTCCGGTTCATCACTGCTCCTCCG

consensusID : consensus_4089#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [CCGCCCCCGAGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAGACTCTAACAACTTCTGCGACCCGGGCGGCTACGGTGGCGGCTGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTATCGGCCGCAGGATCTGAAGAAGTGGCGGCAGGCACCAACGGTCGCCGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACCATCAGGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCTCTCCAGTGACATGATCTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACGACTGCAAAAAGAAACGCTACCCGGCGAAGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTGGAGCACGCTGCTCCGCACGATATGGAGTGTGAT]

[+] EMBL BM607679             [CCGCCCCCGAGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAGACTCTAACAACTTCTGCGACCCGGGCGGCTACGGTGGCGGCTGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTATCGGCCGCAGGATCTGAAGAAGTGGCGGCAGGCACCAACGGTCGCCGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACCATCAGGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCTCTCCAGTGACATGATCTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACGACTGCAAAAAGAAACGCTACCCGGCGAAGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTGGAGCACGCTGCTCCGCACGATATGGAGTGTGAT]




>consensus_4089#2
CCGCCCCCGAGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAGACTCTAA
CAACTTCTGCGACCCGGGCGGCTACGGTGGCGGCTGCGGGGGTCGCGATGCCGACAGTTC
AATGCCTCGCACGTATCGGCCGCAGGATCTGAAGAAGTGGCGGCAGGCACCAACGGTCGC
CGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACCATCA
GGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCTCTCCAGTGACATGAT
CTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACGACTGCAAAAAGAAACGCTACCC
GGCGAAGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTGGAGCACGCT
GCTCCGCACGATATGGAGTGTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4089#0      CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGT 60
consensus_4089#1      --------------------------------------------------------CCGC 4
consensus_4089#2      ------------------------------------------------------------
                                                                                  

consensus_4089#0      TTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGT 120
consensus_4089#1      CCACGCGTCCGGTGC-CGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCGTGT 63
consensus_4089#2      ------------------------------------------------------------
                                                                                  

consensus_4089#0      TGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTG 180
consensus_4089#1      CGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAGCAA 123
consensus_4089#2      ---------------------------------------------------CCGCCCCCG 9
                                                                           *   *  

consensus_4089#0      CGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAG 240
consensus_4089#1      AA----GTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACAC 179
consensus_4089#2      AGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAG-ACTCTAACAAC-TTC 67
                                   *    *   * *                        *          

consensus_4089#0      TGC-ACTGAGAGTCCCGTAAATTTGAA--AGAAATGTCCGTTGTCAGCTTAAACAGAATG 297
consensus_4089#1      AACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTG 239
consensus_4089#2      TGCGACCCGGGCGGC-TACGGTGGCGGCTGCGGGGGTCG--CGATGCCGACAGTTCAATG 124
                        * *         *      *             **     *    *   *    * **

consensus_4089#0      TTCCGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGG 357
consensus_4089#1      CAGTGTGTTT-GTTTTGTACGTAAATCGTGTGTATATTAGT-TTCGCTGTGCCTATATGA 297
consensus_4089#2      CCTCGCAC---GTATCGGCCGCA----GGATCTGAAGAAGT-GGCGGCAGGCACCAACGG 176
                          *      *  * *  *  *         *     ***   *      *      * 

consensus_4089#0      CTGCTGATCGATGTGA---TACTGATAGT-GAAATA---TGCCGACTGTCCCAGT-ACCG 409
consensus_4089#1      AGTATGAAATGTGTAACTATGTTACTAGTTGAAGTG---CAATAATCGTT--AGC-AGTA 351
consensus_4089#2      TCGCCGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACC 236
                           **    * *     *     *        *         *   *   **  *   

consensus_4089#0      GTGGCGGATCA-AGCTGGCTCTGCAAACGGAACGGCGACG-GCTATGATGTTGAGGTGC- 466
consensus_4089#1      TTGATGTGCCGTAGCAGAATCT-CAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTG 410
consensus_4089#2      ATCAGGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCT-CTCCAGTGA- 294
                       *   *       *  *         *    *     *     * *  *      **   

consensus_4089#0      CAAATGCAGCTCGCCAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATC 526
consensus_4089#1      CGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGT--GTT 468
consensus_4089#2      CATGATCTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACG-ACTGCAAAAAGAAAC 353
                      *     * *   *    *  *    *       * *      *                 

consensus_4089#0      CCATCGTGGACGC-GGAGGAGATTGACACCAACTC-GAACAACTTCGGTGACCCGGGCGG 584
consensus_4089#1      GCAGTGCAGCTACCAGCTGCCGATCTTTTATGTTG-AAGTATATTTAGTGCTGCACGTGT 527
consensus_4089#2      GCTACCCGGCGA--AGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTG 411
                       *      *      *  *              *   *     **               

consensus_4089#0      CTACGGTGGCGGCGGCGGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTA 644
consensus_4089#1      GCGCG-TAGTGA-ATCTGCG-TGAAGGTA--GATTCCGGTTCATCACTGCTCCTC-CG-- 579
consensus_4089#2      GAGCA-CGCTGCTCCGCACGATATGGAGTGTGAT-------------------------- 444
                         *      *       **     *     ***                          

consensus_4089#0      CCGGCCGCAGGAGCTGAAGAAG 666
consensus_4089#1      ----------------------
consensus_4089#2      ----------------------