cluster # 4102

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4102 cluster # 4102 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4102#0 length = 1054 sequences # 2

consensus_4102#1 length = 196 sequences # 1

consensusID : consensus_4102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1054
fasta sequence

                              [CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAGCTGCGTGTGCGAAGCAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTTCGAATTGGTGATACGAAATGGGCTGGAGTGTGAAGTCGAGAATGAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTGCGTAAAGGTGATTTGCTATAAAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACATCTTAGTGTACTGAAAATAATTAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTGATACGAGTGAAAGAAGCAACCATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGTATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGCGCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAGGAGCTGCGCGTCTGGTGGATGCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCGCTCGATGCGGAGAAGAATCGCATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTGCTCCGCAAGCTCGAGCTCAACCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTTGAGAACCTGGAGGTGCTCGAGCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTGTTTCAGCGCATGCCCAAGCTGCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTGCGCAGCTCGATCGGTGCCGAGAAGCTTGCCTCACTGACAGTATTATATCTGAAC]

[+] EMBL BM609024             [CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAGCTGCGTGTGCGAAGCAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTTCGAATTGGTGATACGAAATGGGCTGGAGTGTGAAGTCGAGAATGAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTGCGTAAAGGTGATTTGCTATAAAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACATCTTAGTGTACTGAAAATAATTAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTGATACGAGTGAAAGAAGCAACCATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGTATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGCGCTACCGTCCAGC                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM584595             [                                                                                                                                                                                                                                                                                                                                                                                                      ccgGATCAGTATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGCGCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAGGAGCTGCGCGTCTGGTGGATGCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCGCTCGATGCGGAGAAGAATCGCATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTGCTCCGCAAGCTCGAGCTCAACCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTTGAGAACCTGGAGGTGCTCGAGCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTGTTTCAGCGCATGCCCAAGCTGCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTGCGCAGCTCGATCGGTGCCGAGAAGCTTGCCTCACTGACAGTATTATATCTGAAC]




>consensus_4102#0
CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAGCTGCGTGTGCGAAG
CAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAAT
AATTTTACTGCACCGTTCGAATTGGTGATACGAAATGGGCTGGAGTGTGAAGTCGAGAAT
GAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTGCGTAAAGGTGATTTGCTATA
AAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACATCTTAGTGTACTGAAAATAAT
TAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTGATACGAGTGAAAGAAGCAAC
CATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGTATCCGTCGGCCGCCGAGTTA
GTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGT
GCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTG
CATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACC
ACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGC
GCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAGGAGCTGCGCGTCTGGTGGAT
GCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCGCTCGATGCGGAGAAGAATCG
CATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTGCTCCGCAAGCTCGAGCTCAA
CCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTTGAGAACCTGGAGGTGCTCGA
GCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTGTTTCAGCGCATGCCCAAGCT
GCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTGCGCAGCTCGATCGGTGCCGA
GAAGCTTGCCTCACTGACAGTATTATATCTGAAC

consensusID : consensus_4102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence

                              [ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAGCTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCTGGAGTGTGACAGTCAA]

[+] EMBL BX466231             [ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAGCTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCTGGAGTGTGACAGTCAA]




>consensus_4102#1
ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAG
CTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAG
CTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCT
GGAGTGTGACAGTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4102#0      --------------CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAG 46
consensus_4102#1      ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAG 60
                                     *  *  * **      * *********************  ****

consensus_4102#0      CTGC-GTGTGCGAAGCAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAG 105
consensus_4102#1      CTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAG 120
                      **** ********************** ********************************

consensus_4102#0      CTTGTAGTGGTGAATAATTTTACTGCACCGTTC---GAATTGGTGATACGAAA-TGGGCT 161
consensus_4102#1      CTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCT 180
                      *******************************     ** ************** ******

consensus_4102#0      GGAGTGTGA-AGTCGAGAATGAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTG 220
consensus_4102#1      GGAGTGTGACAGTCAA-------------------------------------------- 196
                      ********* **** *                                            

consensus_4102#0      CGTAAAGGTGATTTGCTATAAAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACAT 280
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      CTTAGTGTACTGAAAATAATTAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTG 340
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      ATACGAGTGAAAGAAGCAACCATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGT 400
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      ATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTG 460
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      TGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCG 520
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      ATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCG 580
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      GCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTC 640
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      CGCGACTCCAGCATGGTCGCGCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAG 700
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      GAGCTGCGCGTCTGGTGGATGCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCG 760
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      CTCGATGCGGAGAAGAATCGCATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTG 820
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      CTCCGCAAGCTCGAGCTCAACCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTT 880
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      GAGAACCTGGAGGTGCTCGAGCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTG 940
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      TTTCAGCGCATGCCCAAGCTGCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTG 1000
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      CGCAGCTCGATCGGTGCCGAGAAGCTTGCCTCACTGACAGTATTATATCTGAAC 1054
consensus_4102#1      ------------------------------------------------------