cluster # 4115

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Anopheles gambiae
cluster # 4115 cluster # 4115 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4115#0 length = 1050 sequences # 2

consensus_4115#1 length = 137 sequences # 1

consensusID : consensus_4115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1050
fasta sequence

                              [AGATCGCCCGAGGGGACAACGCACGGTAAATCGTAACAACAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAAACTTTAAACTAGTCGCGTAAATATTTAAATTTAAATGTCAATTATCGTTAAGCAAACCATGCAAACCTGTGTCCTGTAAACATCACTCTATGCAACGATTTGCACGCGTGAGGAGTAATTTAACAATAAATAAAAAAAAACAACATACACTTATCCAAATGACCACAGCGTACGGGAAAGGGCAAAACAGATCTAGTGGATGCACTTTTAATACCTTGACATGCACAGTTAAATTTGAAATTTTAGCCTCCAGCTATAATGCNCGGTTAAAATGCAGCACCAGAGCAAACCAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGG-CCACAAGGCAAAGCTAAGATAGCGAACCACCACGATAAACTAGAACAACTCTTCATATGTATG-TTGTGTATGTGTACGTGTACGTGTAAGTGTACTACATGTAAGCATTAATAAACAAAGCAACATCCATTGCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGGTAACGAGAAAGGGGCATAAAACAAAAGCTCCAGAACACTTCATTAAAATTTCCTATTTGGTGCAACAATGAGAACACAGTTTTGCTAAACGGTTTGAGATGATGATGATTAAAGAAACAATACACACAGCCAAAACCCGGTTACAAATGGGACCGCACACGATGTTCCACGATGCTTCCCCACAGGTCTTCTCCATCGGATACGAAATGTCGATACAAATTTTGGAGCGTTTTATAGCGGGGAATGAGCGTGAATGGTAGAATTTCGTGTGTGGAAAGCATTCGAACAGCGTGAGAAAACTCAACGGTGAATCCAGTTTTAATTTAGTTTTAAAAGAATCACACAATTACACCGCTGAGTTTCGAAATCGAATAAAAGAAAGTCACGTATTCCCATCCCAAACTGCTTGTGATGGAGAAGCGGAACAGTTGAAACCGTGCATCGGTACAT]

[+] EMBL AL930816             [AGATCGCCCGAGGGGACAACGCACGGTAAATCGTAACAACAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAAACTTTAAACTAGTCGCGTAAATATTTAAATTTAAATGTCAATTATCGTTAAGCAAACCATGCAAACCTGTGTCCTGTAAACATCACTCTATGCAACGATTTGCACGCGTGAGGAGTAATTTAACAATAAATAAAAAAAAACAACATACACTTATCCAAATGACCACAGCGTACGGGAAAGGGCAAAACAGATCTAGTGGATGCACTTTTAATACCTTGACATGCACAGTTAAATTTGAAATTTTAGCCTCCAGCTATAATGCNCGGTTAAAATGCAGCACCAGAGCAAACCAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGG CCACAAGGCAAAGCTAAGATAGCGAACCACCACGATAAACTAGAACAACTCTTCATATGTATG TTGTGTATGTGTACGTGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX609348             [                                                                                                                                                                                                                                                                                                                                                        AGCTATAATGC AGGTTAAAATGCAGCACCAGAGCAAACAAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGGCCCACAAGGCAAAGCTAAGATAGCGAACCA CACGATAAACTAGAACAACTCTTCATATGTATGTTTGTGTATGTGTACGTGTACGTGTAAGTGTACTACATGTAAGCATTAATAAACAAAGCAACATCCATTGCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGGTAACGAGAAAGGGGCATAAAACAAAAGCTCCAGAACACTTCATTAAAATTTCCTATTTGGTGCAACAATGAGAACACAGTTTTGCTAAACGGTTTGAGATGATGATGATTAAAGAAACAATACACACAGCCAAAACCCGGTTACAAATGGGACCGCACACGATGTTCCACGATGCTTCCCCACAGGTCTTCTCCATCGGATACGAAATGTCGATACAAATTTTGGAGCGTTTTATAGCGGGGAATGAGCGTGAATGGTAGAATTTCGTGTGTGGAAAGCATTCGAACAGCGTGAGAAAACTCAACGGTGAATCCAGTTTTAATTTAGTTTTAAAAGAATCACACAATTACACCGCTGAGTTTCGAAATCGAATAAAAGAAAGTCACGTATTCCCATCCCAAACTGCTTGTGATGGAGAAGCGGAACAGTTGAAACCGTGCATCGGTACAT]




>consensus_4115#0
AGATCGCCCGAGGGGACAACGCACGGTAAATCGTAACAACAACACTAAACGATGCATCTA
AATGCTAAATAACTCAACATTTCCGATCGCAAAACTTTAAACTAGTCGCGTAAATATTTA
AATTTAAATGTCAATTATCGTTAAGCAAACCATGCAAACCTGTGTCCTGTAAACATCACT
CTATGCAACGATTTGCACGCGTGAGGAGTAATTTAACAATAAATAAAAAAAAACAACATA
CACTTATCCAAATGACCACAGCGTACGGGAAAGGGCAAAACAGATCTAGTGGATGCACTT
TTAATACCTTGACATGCACAGTTAAATTTGAAATTTTAGCCTCCAGCTATAATGCNCGGT
TAAAATGCAGCACCAGAGCAAACCAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTT
AACACAGCAAACCGGCCACAAGGCAAAGCTAAGATAGCGAACCACCACGATAAACTAGAA
CAACTCTTCATATGTATGTTGTGTATGTGTACGTGTACGTGTAAGTGTACTACATGTAAG
CATTAATAAACAAAGCAACATCCATTGCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGG
TAACGAGAAAGGGGCATAAAACAAAAGCTCCAGAACACTTCATTAAAATTTCCTATTTGG
TGCAACAATGAGAACACAGTTTTGCTAAACGGTTTGAGATGATGATGATTAAAGAAACAA
TACACACAGCCAAAACCCGGTTACAAATGGGACCGCACACGATGTTCCACGATGCTTCCC
CACAGGTCTTCTCCATCGGATACGAAATGTCGATACAAATTTTGGAGCGTTTTATAGCGG
GGAATGAGCGTGAATGGTAGAATTTCGTGTGTGGAAAGCATTCGAACAGCGTGAGAAAAC
TCAACGGTGAATCCAGTTTTAATTTAGTTTTAAAAGAATCACACAATTACACCGCTGAGT
TTCGAAATCGAATAAAAGAAAGTCACGTATTCCCATCCCAAACTGCTTGTGATGGAGAAG
CGGAACAGTTGAAACCGTGCATCGGTACAT

consensusID : consensus_4115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGTAAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAACTTTAAACTA]

[+] EMBL BX604574             [AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGTAAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAACTTTAAACTA]




>consensus_4115#1
AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGT
AAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGA
TCGCAAACTTTAAACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4115#0      ---------------------------AGATCGCCCGAGG----GGACAA-CGCAC-GGT 27
consensus_4115#1      AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGT 60
                                                   *  **** *      ****** ***** ***

consensus_4115#0      AAATCGTAACAAC-AACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGA 86
consensus_4115#1      AAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGA 120
                      ************* **********************************************

consensus_4115#0      TCGCAAAACTTTAAACTAGTCGCGTAAATATTTAAATTTAAATGTCAATTATCGTTAAGC 146
consensus_4115#1      TCGCAAA-CTTTAAACTA------------------------------------------ 137
                      ******* **********                                          

consensus_4115#0      AAACCATGCAAACCTGTGTCCTGTAAACATCACTCTATGCAACGATTTGCACGCGTGAGG 206
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      AGTAATTTAACAATAAATAAAAAAAAACAACATACACTTATCCAAATGACCACAGCGTAC 266
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GGGAAAGGGCAAAACAGATCTAGTGGATGCACTTTTAATACCTTGACATGCACAGTTAAA 326
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      TTTGAAATTTTAGCCTCCAGCTATAATGCNCGGTTAAAATGCAGCACCAGAGCAAACCAA 386
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      AGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGGCCACAAGGCAA 446
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      AGCTAAGATAGCGAACCACCACGATAAACTAGAACAACTCTTCATATGTATGTTGTGTAT 506
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GTGTACGTGTACGTGTAAGTGTACTACATGTAAGCATTAATAAACAAAGCAACATCCATT 566
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGGTAACGAGAAAGGGGCATAAAACAAAA 626
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GCTCCAGAACACTTCATTAAAATTTCCTATTTGGTGCAACAATGAGAACACAGTTTTGCT 686
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      AAACGGTTTGAGATGATGATGATTAAAGAAACAATACACACAGCCAAAACCCGGTTACAA 746
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      ATGGGACCGCACACGATGTTCCACGATGCTTCCCCACAGGTCTTCTCCATCGGATACGAA 806
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      ATGTCGATACAAATTTTGGAGCGTTTTATAGCGGGGAATGAGCGTGAATGGTAGAATTTC 866
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GTGTGTGGAAAGCATTCGAACAGCGTGAGAAAACTCAACGGTGAATCCAGTTTTAATTTA 926
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GTTTTAAAAGAATCACACAATTACACCGCTGAGTTTCGAAATCGAATAAAAGAAAGTCAC 986
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      GTATTCCCATCCCAAACTGCTTGTGATGGAGAAGCGGAACAGTTGAAACCGTGCATCGGT 1046
consensus_4115#1      ------------------------------------------------------------
                                                                                  

consensus_4115#0      ACAT 1050
consensus_4115#1      ----