cluster # 4117

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4117 cluster # 4117 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4117#0 length = 748 sequences # 2

consensus_4117#1 length = 424 sequences # 1

consensusID : consensus_4117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 748
fasta sequence

                              [CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCGAGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGTCGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGTCTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTTTACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGGAGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGATGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGATCGGTTTCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATGTACGCGATCCGCGATCAAGCGATGGAAGGGGCCGGCGATGGAGGCACGCAAAGTCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAAGCAGCAGGAAGATCATCCAGCTCAGCGGGATACCGAAGACGGGCAAC]

[+] EMBL BM605032             [CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCGAGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGTCGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGTCTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTTTACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGGAGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGATGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGA                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM589650             [                                                                                                                                                                        ccgCGTTGGCGTCTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTTTACATTCGTCGGCGGGCATTGGG CCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGGAGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGATGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGATCGGTTTCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATGTACGCGATCCGCGATCAAGCGATGGAAGGGGCCGGCGATGGAGGCACGCAAAGTCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAAGCAGCAGGAAGATCATCCAGCTCAGCGGGATACCGAAGACGGGCAAC]




>consensus_4117#0
CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCG
AGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGT
CGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGT
CTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTT
TACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAG
TGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGG
AGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGA
TGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGATCGGTT
TCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATGTACGCGATCCGCGATCAA
GCGATGGAAGGGGCCGGCGATGGAGGCACGCAAAGTCGCAAGAAGTCACAGTACGAGGAG
TATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACG
CTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAAGCAGCAGGAAGATCATCCA
GCTCAGCGGGATACCGAAGACGGGCAAC

consensusID : consensus_4117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [CCGCCCACGCGTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACATCACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACTGAACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTACCGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATAATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATGAGAACTAGATCCGGGGCTTCTGCAAGGGAATGAGCCGGGAGCCCAAAGTGGTGGCCGTACAGAATGCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGAGCATGATTA]

[+] EMBL BM577331             [CCGCCCACGCGTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACATCACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACTGAACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTACCGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATAATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATGAGAACTAGATCCGGGGCTTCTGCAAGGGAATGAGCCGGGAGCCCAAAGTGGTGGCCGTACAGAATGCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGAGCATGATTA]




>consensus_4117#1
CCGCCCACGCGTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTC
ACATCACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGC
GCACTGAACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTAC
CGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATA
ATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATG
AGAACTAGATCCGGGGCTTCTGCAAGGGAATGAGCCGGGAGCCCAAAGTGGTGGCCGTAC
AGAATGCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGAGCATG
ATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4117#0      CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCG 60
consensus_4117#1      ------------------------------------------------------------
                                                                                  

consensus_4117#0      AGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGT 120
consensus_4117#1      ------------------------------------------------------------
                                                                                  

consensus_4117#0      CGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGT 180
consensus_4117#1      --------------------------------------------------CCGCCCACGC 10
                                                                        ***    ** 

consensus_4117#0      CTCCGGCC---GTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAAC 237
consensus_4117#1      GTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGA--GTTTCACATCACG 68
                       ****  *   *   **      *  ***  ** * *   ***     *    ** **  

consensus_4117#0      CTTTACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTG 297
consensus_4117#1      CGCAACATACTGGAGCAGATACGGGG--TAAGCTGAACACGCTGCTGGAA-----CAGCG 121
                      *   **** *    ** *  *  ***    **    *  * *  * ****     * * *

consensus_4117#0      AAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAA--CTGTCCGTAAT 355
consensus_4117#1      CACTG-AACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTAC 180
                       * ** ** * ***** ***  **** * ** ****** * ** * *      * ** * 

consensus_4117#0      CATGGA-GGGCAA--CGATGGTCAAAT-TCCGCGGCCCATCTGGCCC---CTGGACACGG 408
consensus_4117#1      CGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATA 240
                      *   ** ******  ** *  * **   * ** * ** ***  * *    ***** *   

consensus_4117#0      ACGACTCGCTGATGGACATTAATCTGGA---GTCGTTTCGCATGGCGAACCACAGCAGTC 465
consensus_4117#1      ATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATG 300
                      *     *  *  ** *     *******   **   * **** *  ********  * * 

consensus_4117#0      AGAACTTGATC---GGTTTCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATG 522
consensus_4117#1      AGAACTAGATCCGGGGCTTCTGCAAG---GGAATGAGCCGGGAGCCCAAAGTGGTGGCCG 357
                      ****** ****   ** ***   * *   *       **  ** * *  ** *      *

consensus_4117#0      TACGCGATCCGCGATCAAGCGATGGAAGGGGCCGGCGA-TGGAGGCACGCAAAGTCGCAA 581
consensus_4117#1      TACAGAAT--GCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGA 415
                      ***   **  *** *  *** * * **  *  *      ****  **     **** * *

consensus_4117#0      GAAGTCACAGTACGAGGAGTATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGAT 641
consensus_4117#1      GCATGATTA--------------------------------------------------- 424
                      * *     *                                                   

consensus_4117#0      ACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAA 701
consensus_4117#1      ------------------------------------------------------------
                                                                                  

consensus_4117#0      GCAGCAGGAAGATCATCCAGCTCAGCGGGATACCGAAGACGGGCAAC 748
consensus_4117#1      -----------------------------------------------