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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence
[CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTTAAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGCAAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGGTTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGATGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGCGACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGGTTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAGTGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG]
[+] EMBL BM639483 [CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTTAAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGCAAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGGTTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGATGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGCGACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGGTTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAGTGGTTGCTTCGTTTTCATCCCCCCC ]
[+] EMBL BM592844 [ ccGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCACGCGTGTCCTTTTACTTCCCCTCTCTCCCCAACCTCTTAGCCAGGTTTCTCTGAGCTGAACTCAGAATTTTCCACTCCACTAACGTTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG]
consensusID : consensus_4118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGAAGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGCCTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG]
[-] EMBL BX617311 [CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGAAGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGCCTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4118#0 CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGA 60
consensus_4118#1 ------------------------------------------------------------
consensus_4118#0 GAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTT 120
consensus_4118#1 ------------------------------------------------------------
consensus_4118#0 AAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGC 180
consensus_4118#1 ------------------------------------------------------------
consensus_4118#0 AAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGG 240
consensus_4118#1 ------------------------------------------------------------
consensus_4118#0 TTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGA 300
consensus_4118#1 ------------------------------------------------------------
consensus_4118#0 TGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGC 360
consensus_4118#1 ----------CCTTATACAGCTTGA--TGTAGCACT----CTATATTAGCTTCAAAATCG 44
* * * * ** * ** ** * ** * * ** **
consensus_4118#0 GACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGG 420
consensus_4118#1 AATCACAACAATGAGAAGTG---TTTTGAATTGTATGGAAACAGAAA---CACTGAAAGG 98
* **** ** * * ** * * ** ****** *** * **
consensus_4118#0 TTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGA 480
consensus_4118#1 TTCG--TAATAATATGCGTTTCGCCT-----CTGACTGTGTATCTGTGTGTGTGTGTTTA 151
** * * * * ** * **** **** * * ** * * *
consensus_4118#0 AGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCT--CTCTCGCGTGTCCTTTTACCTTCCC 538
consensus_4118#1 AGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCG 211
** * * * * * * *** ** ** * *** * *** ** **
consensus_4118#0 TCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACT 598
consensus_4118#1 GTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACC 271
** * * ** ** * * * * * * * *** * **
consensus_4118#0 AGTGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCG 658
consensus_4118#1 TCTTCTCAAAA-GCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAG-GTTGGACAG 329
* * * * * * * * ** * * ** *** * * * *
consensus_4118#0 AGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCA 718
consensus_4118#1 AGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCA 389
************************************************************
consensus_4118#0 CCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGC 778
consensus_4118#1 CCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGC 449
***************************** ****************** ***********
consensus_4118#0 GAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAA 838
consensus_4118#1 GAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAA---GAGATGAAGCGAAAA 506
*************************************** ** **** ***** ****
consensus_4118#0 CTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACA 898
consensus_4118#1 ATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACA 566
***********************************************************
consensus_4118#0 GAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGA 958
consensus_4118#1 AAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG----- 621
************************* ****************** ***** **
consensus_4118#0 GCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGC 1018
consensus_4118#1 ------------------------------------------------------------
consensus_4118#0 AG 1020
consensus_4118#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||