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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1074 fasta sequence
[CCGGCCCCAGTACGGTCCGTGGAGTCCCCCGGGGACCGACTGCAACACCATGTACGGAAAATACTTCTCCACCAAGCGCGATATCTTCTGGGCAGTGGTTGTGTTTTGCTGCATTCTAGCGCTTTATCTCTATCACAATCAGCTGTCGGATCGGCTGGAAACGCTGGAAGAGTTTAAGCGAGTACATCAGGCGGAGCAGCGGCGCACTGTGCAGCGTGAGGTCGGCTTTGTCGTGCCAGCGTATCAAGTGGTCCAGTACGATGCACACTACACGCCGGTACCGGACGATGGGTGGATCGAGACACTGCCCGGTGATATGGGCAAGCCGGTGACGCTGCCCGACAACATTACCGAGGAGGTGCATCAGCTGGTGAGGCAAGGGTACGACCAGCAGGGTCTGAACCAGTACGTTAGTGATCTGATACCGGTGAGGCGCCGGTTGCCCGATCTGCGCGATCCCTGGTGTACGGCGGAGCCACGGCTACTTCCCGAATTACCGCAGGCGTCCATAGTGATCGTGTTCTTCAACGAAGCTTGGTCGGTGCTGGTACGAACCGTTCATTCCATCCTCGACCGGGACGCCGCACGCGCTCATCCGTGAGATCATTTTTGGTGGACGATTTTTCCAATCTTGCTCATCTACGTACCCAGCTGGATGAGTATTTTAGCAGCTATCCGCTTGCACGGTGCCCGGAATGCGTCGTCCGACTTTCTCACCTTCCTCGATGCGCACTGCGAGTGTATGAACGGGTGGCTCGAGGGGCAGCTGGACCCGGTCGTTCGCAATCCGCACACCATCGCACTGCCAACGATCGACTGGATCGATGAGAACAACCTGAAGCTGGTCAGTGACAAGGCGCCCGTGTTTTACGGTGCGATGGGCTGGGGACTGGACTTTGAGTGGCGTGGCCGCTGGGATCGCGTGCACAAGCCGGACAACAAGATGGAACCGTTCAGTACGCCGGTGATGGCCGGTGGATTGTTCACGATTCATCGGAAGTTTTTCGAGTGGCTCGGCTGGTACGACGANGGCATGGATGTGTACNGCGGCGANAACATTGAGCTGTCNCTGAA]
[+] EMBL BM593558 [CCGGCCCCAGTACGGTCCGTGGAGTCCCCCGGGGACCGACTGCAACACCATGTACGGAAAATACTTCTCCACCAAGCGCGATATCTTCTGGGCAGTGGTTGTGTTTTGCTGCATTCTAGCGCTTTATCTCTATCACAATCAGCTGTCGGATCGGCTGGAAACGCTGGAAGAGTTTAAGCGAGTACATCAGGCGGAGCAGCGGCGCACTGTGCAGCGTGAGGTCGGCTTTGTCGTGCCAGCGTATCAAGTGGTCCAGTACGATGCACACTACACGCCGGTACCGGACGATGGGTGGATCGAGACACTGCCCGGTGATATGGGCAAGCCGGTGACGCTGCCCGACAACATTACCGAGGAGGTGCATCAGCTGGTGAGGCAAGGGTACGACCAGCAGGGTCTGAACCAGTACGTTAGTGATCTGATACCGGTGAGGCGCCGGTTGCCCGATCTGCGCGATCCCTGGTGTACGGCGGAGCCACGGCTACTTCCCGAATTACCGCAGGCGTCCATAGTGATCGTGTTCTTCAACGAAGCTTGGTCGGTGCTGGTACGAACCGTTCATTCCATCCTCGACCGGGACGCCGCACGCGCTCATCCGTGAGATCATTTTTGGTGGACGATTTTTCCAATCTTGCTCATCTACGTACCCAGCTGGATG ]
[+] EMBL BX622871 [ GTCGTGCCAGAGTATCAAGTGGTCCAGTACGATGCACACTACACGCCGGTACTGGACGATGGGTGGATTGAGACACTGCCCGGTGATATGGGCAAGCCGGTGACGCTGCCCGACAACATCACCGAGGAGGTCCATCAGCTGGTGAGGCAAGGGTACGACCAGCAAGGACTGAACCAGTACGTTAGTGATCTGATACCGGTGAGGCGCCGGTTGCCCGATCTGCGCGATCCCTGGTGTACGGCGGAGACACGGCTACTTCCCGAATTACCGCAGGCGTCCATAGTGATCGTGTTCTTCAACGAAGCTTGGTCGGTGCTGGTACGAACCGTTCATTCCATCCTCGACC GTACGCCGCACGCGCTCATCCGTGAGATCA TTCTGGTGGACGATTTTTCCAATCTTGCTCATCTACGTACCCAGCTGGACGAGTATTTTAGCAGCTATCCGCTTGCACGGTGCCCGGAATGCGTCGTCCGACTTTCTCACCTTCCTCGATGCGCACTGCGAGTGTATGAACGGGTGGCTCGAGGGGCAGCTGGACCCGGTCGTTCGCAATCCGCACACCATCGCACTGCCAACGATCGACTGGATCGATGAGAACAACCTGAAGCTGGTCAGTGACAAGGCGCCCGTGTTTTACGGTGCGATGGGCTGGGGACTGGACTTTGAGTGGCGTGGCCGCTGGGATCGCGTGCACAAGCCGGACAACAAGATGGAACCGTTCAGTACGCCGGTGATGGCCGGTGGATTGTTCACGATTCATCGGAAGTTTTTCGAGTGGCTCGGCTGGTACGACGANGGCATGGATGTGTACNGCGGCGANAACATTGAGCTGTCNCTGAA]
consensusID : consensus_4121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[GAATCGGCACGAGGTCNGATGCGCACTGCGAGTGTATGAACGGGTGGCTCGAGGGGCAGCTGGACCCGGTCGTTCGCAATCCGCACACCATCGCACTGCCAACGATCGACTGGATCGATGAGAACAACCTGAAGCTGGTCAGTGACAAGGCGCCCGTGTTTTACGGTGCGATGGGCTGGGGACTGGACTTTGAGTGGCGTGGCCGCTGGGATCGCGTGCACAAGCCGGACAACAAGATGGAACCGTTCAGTACGCCGGTATGGCCGGGTGGATTGTTCACGATTCATCGGGAAGTTTTTTCGAGTGGCTCGGCTAGGTACGACGAGGGCATGGATGTGTACGGCCGGCGAGAACATTGAGCTGTCGCTAGAAGGCTTGGCATGTGTGGTGACAAGGTTGGCTGACGGTACCCGTGCGCCAGAGTCGCGTCACATTTCAGAAGACGGGGACATCCGTATCTTANGAAGTGTANAGAACCCGACGTCGGTGCGGTGTCAAACGTCCGGGTTTCCGCGTACGCGGAA]
[+] EMBL BX468736 [GAATCGGCACGAGGTCNGATGCGCACTGCGAGTGTATGAACGGGTGGCTCGAGGGGCAGCTGGACCCGGTCGTTCGCAATCCGCACACCATCGCACTGCCAACGATCGACTGGATCGATGAGAACAACCTGAAGCTGGTCAGTGACAAGGCGCCCGTGTTTTACGGTGCGATGGGCTGGGGACTGGACTTTGAGTGGCGTGGCCGCTGGGATCGCGTGCACAAGCCGGACAACAAGATGGAACCGTTCAGTACGCCGGTATGGCCGGGTGGATTGTTCACGATTCATCGGGAAGTTTTTTCGAGTGGCTCGGCTAGGTACGACGAGGGCATGGATGTGTACGGCCGGCGAGAACATTGAGCTGTCGCTAGAAGGCTTGGCATGTGTGGTGACAAGGTTGGCTGACGGTACCCGTGCGCCAGAGTCGCGTCACATTTCAGAAGACGGGGACATCCGTATCTTANGAAGTGTANAGAACCCGACGTCGGTGCGGTGTCAAACGTCCGGGTTTCCGCGTACGCGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4121#0 CCGGCCCCAGTACGGTCCGTGGAGTCCCCCGGGGACCGACTGCAACACCATGTACGGAAA 60
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 ATACTTCTCCACCAAGCGCGATATCTTCTGGGCAGTGGTTGTGTTTTGCTGCATTCTAGC 120
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GCTTTATCTCTATCACAATCAGCTGTCGGATCGGCTGGAAACGCTGGAAGAGTTTAAGCG 180
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 AGTACATCAGGCGGAGCAGCGGCGCACTGTGCAGCGTGAGGTCGGCTTTGTCGTGCCAGC 240
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GTATCAAGTGGTCCAGTACGATGCACACTACACGCCGGTACCGGACGATGGGTGGATCGA 300
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GACACTGCCCGGTGATATGGGCAAGCCGGTGACGCTGCCCGACAACATTACCGAGGAGGT 360
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GCATCAGCTGGTGAGGCAAGGGTACGACCAGCAGGGTCTGAACCAGTACGTTAGTGATCT 420
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GATACCGGTGAGGCGCCGGTTGCCCGATCTGCGCGATCCCTGGTGTACGGCGGAGCCACG 480
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GCTACTTCCCGAATTACCGCAGGCGTCCATAGTGATCGTGTTCTTCAACGAAGCTTGGTC 540
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 GGTGCTGGTACGAACCGTTCATTCCATCCTCGACCGGGACGCCGCACGCGCTCATCCGTG 600
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 AGATCATTTTTGGTGGACGATTTTTCCAATCTTGCTCATCTACGTACCCAGCTGGATGAG 660
consensus_4121#1 ------------------------------------------------------------
consensus_4121#0 TATTTTAGCAGCTATCCGCTTGCACGGTGCCCGGAATGCGTCGTCCGACTTTCTCACCTT 720
consensus_4121#1 -----------------------------------------------GAATCGGCACGAG 13
* ***
consensus_4121#0 CCTCGATGCGCACTGCGAGTGTATGAACGGGTGGCTCGAGGGGCAGCTGGACCCGGTCGT 780
consensus_4121#1 GTCNGATGCGCACTGCGAGTGTATGAACGGGTGGCTCGAGGGGCAGCTGGACCCGGTCGT 73
********************************************************
consensus_4121#0 TCGCAATCCGCACACCATCGCACTGCCAACGATCGACTGGATCGATGAGAACAACCTGAA 840
consensus_4121#1 TCGCAATCCGCACACCATCGCACTGCCAACGATCGACTGGATCGATGAGAACAACCTGAA 133
************************************************************
consensus_4121#0 GCTGGTCAGTGACAAGGCGCCCGTGTTTTACGGTGCGATGGGCTGGGGACTGGACTTTGA 900
consensus_4121#1 GCTGGTCAGTGACAAGGCGCCCGTGTTTTACGGTGCGATGGGCTGGGGACTGGACTTTGA 193
************************************************************
consensus_4121#0 GTGGCGTGGCCGCTGGGATCGCGTGCACAAGCCGGACAACAAGATGGAACCGTTCAGTAC 960
consensus_4121#1 GTGGCGTGGCCGCTGGGATCGCGTGCACAAGCCGGACAACAAGATGGAACCGTTCAGTAC 253
************************************************************
consensus_4121#0 GCCGGTGATGGCCGGTGGATTGTTCACGATTCATCGGAAG--TTTTTCGAGTGGCTCGGC 1018
consensus_4121#1 GCCGGTATGGCCGGGTGGATTGTTCACGATTCATCGGGAAGTTTTTTCGAGTGGCTCGGC 313
****** * * ************************ * ******************
consensus_4121#0 T-GGTACGACGANGGCATGGATGTGTACNGC-GGCGANAACATTGAGCTGTCNCTGAA-- 1074
consensus_4121#1 TAGGTACGACGAGGGCATGGATGTGTACGGCCGGCGAGAACATTGAGCTGTCGCTAGAAG 373
* ********** *************** ** ***** ************** ** *
consensus_4121#0 ------------------------------------------------------------
consensus_4121#1 GCTTGGCATGTGTGGTGACAAGGTTGGCTGACGGTACCCGTGCGCCAGAGTCGCGTCACA 433
consensus_4121#0 ------------------------------------------------------------
consensus_4121#1 TTTCAGAAGACGGGGACATCCGTATCTTANGAAGTGTANAGAACCCGACGTCGGTGCGGT 493
consensus_4121#0 -------------------------------
consensus_4121#1 GTCAAACGTCCGGGTTTCCGCGTACGCGGAA 524
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||