cluster # 4125

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Anopheles gambiae
cluster # 4125 cluster # 4125 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4125#0 length = 836 sequences # 2

consensus_4125#1 length = 584 sequences # 1

consensusID : consensus_4125#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 836
fasta sequence

                              [CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCCAGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCCGCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGCGGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGCGGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGTGCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTCGAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAGACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTCGACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGCTTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAGGACTACGTGGCGGACGAGCGGACGCTGGAAGCGTTCAAGCTCGAGGTGGCCACGTTCAAGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGGCGCCTGCATGAAGCCGCCCCGGCTCGCGATCGTCACGTCGCTCTGCAAGGGCAACACGCTCTTCACGCACATCCATCTGCG]

[+] EMBL BM616580             [CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCCAGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCCGCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGCGGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGCGGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGTGCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTCGAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAGACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTCGACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGCTTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAGGACTACGTGGCGGACGA                                                                                                                                                               ]
[+] EMBL BM637733             [                                                                                                                                                                                                                                                                                                                                     ccgGCAGCGGCGTCTACACGATGGACACGAGCGTCGAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAGACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTCGACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGCTTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAGGACTACGTGGCGGACGAGCGGACGCTGGAAGCGTTCAAGCTCGAGGTGGCCACGTTCAAGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGGCGCCTGCATGAAGCCGCCCCGGCTCGCGATCGTCACGTCGCTCTGCAAGGGCAACACGCTCTTCACGCACATCCATCTGCG]




>consensus_4125#0
CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCC
AGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCC
GCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGC
GGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGC
GGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGT
GCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTC
GAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAG
ACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTC
GACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTG
AAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGC
TTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAG
GACTACGTGGCGGACGAGCGGACGCTGGAAGCGTTCAAGCTCGAGGTGGCCACGTTCAAG
AAGACGCGCCACGAAAACGTGGTGCTGTTCATGGGCGCCTGCATGAAGCCGCCCCGGCTC
GCGATCGTCACGTCGCTCTGCAAGGGCAACACGCTCTTCACGCACATCCATCTGCG

consensusID : consensus_4125#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAAGACGGTTCGGNCTAGACGCGACCAGCACCGAACTCGTCGTCCGACCGCACCCCGATATGGCTCGACTCGACCGAGGAGCGTGACCATNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAACGGAGAAGATCTGGCAACGGGCGCTTCTGGCACCGTGCATCGTGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGCTGCTGAATGGAGGACTACGTGGCGGACGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTGTGGCCACGTTCAATGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGTGCGCCTGCATGAAGCCAGACTCCTGGCTCGCTGATCAGTCGACGTACTGCATCTGCAAGGAGCGAACACAGCTCTTCACGCACATCCATCTGCGACAAGGACAACGTTCAACTTGAACCGGACACACGCTGGTGGCGCAACAGATCTCGCGAGGGCATGGGCTATCTTGCACTGCGCGCGGCATCGTCCAAAAGGACCTG]

[+] EMBL AL930847             [TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAAGACGGTTCGGNCTAGACGCGACCAGCACCGAACTCGTCGTCCGACCGCACCCCGATATGGCTCGACTCGACCGAGGAGCGTGACCATNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAACGGAGAAGATCTGGCAACGGGCGCTTCTGGCACCGTGCATCGTGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGCTGCTGAATGGAGGACTACGTGGCGGACGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTGTGGCCACGTTCAATGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGTGCGCCTGCATGAAGCCAGACTCCTGGCTCGCTGATCAGTCGACGTACTGCATCTGCAAGGAGCGAACACAGCTCTTCACGCACATCCATCTGCGACAAGGACAACGTTCAACTTGAACCGGACACACGCTGGTGGCGCAACAGATCTCGCGAGGGCATGGGCTATCTTGCACTGCGCGCGGCATCGTCCAAAAGGACCTG]




>consensus_4125#1
TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAAGACGGTTCGGNCTAGACGCGACCAGC
ACCGAACTCGTCGTCCGACCGCACCCCGATATGGCTCGACTCGACCGAGGAGCGTGACCA
TNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTCTCGCTGAAGGAGTGGGACATCCCGTA
CGACGATCTGCACCTGAACGGAGAAGATCTGGCAACGGGCGCTTCTGGCACCGTGCATCG
TGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGCTGCTGAATGGAGGACTACGTGGCGGA
CGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTGTGGCCACGTTCAATGAAGACGCGCCA
CGAAAACGTGGTGCTGTTCATGGTGCGCCTGCATGAAGCCAGACTCCTGGCTCGCTGATC
AGTCGACGTACTGCATCTGCAAGGAGCGAACACAGCTCTTCACGCACATCCATCTGCGAC
AAGGACAACGTTCAACTTGAACCGGACACACGCTGGTGGCGCAACAGATCTCGCGAGGGC
ATGGGCTATCTTGCACTGCGCGCGGCATCGTCCAAAAGGACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4125#0      CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCC 60
consensus_4125#1      ------------------------------------------------------------
                                                                                  

consensus_4125#0      AGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCC 120
consensus_4125#1      ------------------------------------------------------------
                                                                                  

consensus_4125#0      GCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGC 180
consensus_4125#1      ------------------------------------------------------------
                                                                                  

consensus_4125#0      GGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGC 240
consensus_4125#1      ------------------------------------------------------------
                                                                                  

consensus_4125#0      GGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGT 300
consensus_4125#1      ------------------------------------------------------------
                                                                                  

consensus_4125#0      GCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTC 360
consensus_4125#1      ------------------------------------------------------------
                                                                                  

consensus_4125#0      GAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGC-CGGGCGGAGGCGAGGACAA 419
consensus_4125#1      --------------------------TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAA 34
                                                 *  *   *  **  *******************

consensus_4125#0      GACCGGTTCGGCCAG-CGCGACCAGCACCGA-CTCGTCGTCCGACCGCACCCCGATACGG 477
consensus_4125#1      GACGGTTCGGNCTAGACGCGACCAGCACCGAACTCGTCGTCCGACCGCACCCCGATATGG 94
                      *** * *  * * ** *************** ************************* **

consensus_4125#0      CTCGACTCGACCGAGGAGCGTGACCA-CGAGAGCAGCTGGCC-GCGGCAGAACTCGC-TC 534
consensus_4125#1      CTCGACTCGACCGAGGAGCGTGACCATNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTC 154
                      **************************  ************** ************** **

consensus_4125#0      TCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAA-GGAGAAGATC-GGCA 592
consensus_4125#1      TCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAACGGAGAAGATCTGGCA 214
                      ******************************************** ********** ****

consensus_4125#0      ACGGGCGCTTC-GGCACCGTGCATCGGG--CGCTCTGGCACGGCGACGTGGCCGTGAAGC 649
consensus_4125#1      ACGGGCGCTTCTGGCACCGTGCATCGTGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGC 274
                      *********** ************** *   ************ ****************

consensus_4125#0      TGCTGAA-GGAGGACTACGTGGCGGACGAGC-GGACGCTGGAAGCGTTCAAGCTCGAG-G 706
consensus_4125#1      TGCTGAATGGAGGACTACGTGGCGGACGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTG 334
                      ******* *********************** ************************** *

consensus_4125#0      TGGCCACGTTCAA-GAAGACGCGCCACGAAAACGTGGTGCTGTTCATGG-GCGCCTGCAT 764
consensus_4125#1      TGGCCACGTTCAATGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGTGCGCCTGCAT 394
                      ************* *********************************** **********

consensus_4125#0      GAAGCCG---CCCCGGCTCGC-----GATCGTCACGTCGC-TCTGCAAGGGC--AACAC- 812
consensus_4125#1      GAAGCCAGACTCCTGGCTCGCTGATCAGTCGACGTACTGCATCTGCAAGGAGCGAACACA 454
                      ******     ** *******       *** *     ** *********    ***** 

consensus_4125#0      GCTCTTCACGCACATCCATCTGCG------------------------------------ 836
consensus_4125#1      GCTCTTCACGCACATCCATCTGCGACAAGGACAACGTTCAACTTGAACCGGACACACGCT 514
                      ************************                                    

consensus_4125#0      ------------------------------------------------------------
consensus_4125#1      GGTGGCGCAACAGATCTCGCGAGGGCATGGGCTATCTTGCACTGCGCGCGGCATCGTCCA 574
                                                                                  

consensus_4125#0      ----------
consensus_4125#1      AAAGGACCTG 584