These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGAAACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTTTACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAGGAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGCTGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGTAGAGCGCACCTTAGTTTTACAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAA] [+] EMBL BX604622 [TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGAAACTTAAACTTCCTCCAGTACTACT ] [+] EMBL BX621721 [ TACCATTTGCAGTCGCCGGCACGAAACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTTTACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAGGAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGCTGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGTAGAGCGCACCTTAGTTTTACAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAA] consensusID : consensus_4126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [GGCCAGAATCGGCACGATGGAGTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAACCCATCTGCATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGCAATAGAACGTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAAGTTGAGGCTAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN] [+] EMBL BX468396 [GGCCAGAATCGGCACGATGGAGTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAACCCATCTGCATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGCAATAGAACGTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAAGTTGAGGCTAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4126#0 TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGA 60 consensus_4126#1 ------------------------------------------------------------ consensus_4126#0 AACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTT 120 consensus_4126#1 ------------------------------------------------------------ consensus_4126#0 TACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAG 180 consensus_4126#1 ------------------------------------------------------------ consensus_4126#0 GAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGC 240 consensus_4126#1 ------------------------------------------------------------ consensus_4126#0 TGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGT 300 consensus_4126#1 -----------------------------------------------GGCCAGAATCGGC 13 ** ** *** ** consensus_4126#0 AGAGCGCACCTTAGTTTTACAAA-GGGTTTTTTAACAAAGAAATGACTAGACAACGAGTG 359 consensus_4126#1 ACGATGGA-----GTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTG 68 * * * ********** ************************************ consensus_4126#0 TACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAA 419 consensus_4126#1 TACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAA 128 ************************************************************ consensus_4126#0 GTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGT 479 consensus_4126#1 GTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGT 188 ************************************************************ consensus_4126#0 TTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTT-TTTTGTGCAATAATTTA 538 consensus_4126#1 TTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCAATAATTTA 248 ****************************************** ***************** consensus_4126#0 AACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATA 598 consensus_4126#1 AACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATA 308 ************************************************************ consensus_4126#0 TGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCC 658 consensus_4126#1 TGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCC 368 ************************************************************ consensus_4126#0 TGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGT 718 consensus_4126#1 TGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGT 428 ************************************************************ consensus_4126#0 GATAAGTTGGTGTGAAGGATGAATGAA--------------------------------- 745 consensus_4126#1 GATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAACCCATCTGC 488 *************************** consensus_4126#0 ------------------------------------------------------------ consensus_4126#1 ATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGCAATAGAAC 548 consensus_4126#0 ------------------------------------------------------------ consensus_4126#1 GTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAAGTTGAGGC 608 consensus_4126#0 -------------------------------------------------- consensus_4126#1 TAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN 658 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||