|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1062 fasta sequence
[CGACATCCGTGACACGAGCCTGGGCTACCATGCGAACCTCTGCAGCATGGCATTCGAACGAGCCTCGTACGCGTATCAGGAGAAGTACCGCAAGGTCTGCGAAACCTCGCGCCGCCGTAGTCAGGNGTGCGGCGTGAACGGTGTCACCTATCGGAGCGAATGTGAAGCGTGGAGCGATTACTCCACCGTCGACTACAACGGACCGTGCCAGGAGGTGGGCCTGATCAGCCCCACGCTCGATGCCCGCTGCTCGTCGATCAAGTGTCCGCGGCGAAAGCTGACGAACTGTAATCCGGTGCTGCCACCCGGTGCCTGCTGTCCGGTGTGCGGCACCGCCCTGCGCATCGTGTACTCGCGCAAACAGATCGATCGTGGCCTCTACGCACTGAAGGGTCAGTCGACGGAGTATCTTACGCTCAAGTCGATCTTACGCTCCCTGGAAGCGCTCCTGCAGACGGTCGAATGTCGGCTGAGCGGTCAGCTAACGTTCGAGAACGATCTGTATGTGGTGCTGGAAACGTTGAGCCGAAATCCGTCCCGCCTGCAGACAGAAATTTGTGCGCGGGAAGCGGAACGGCTCGTGACACTGGTGCGCACGCAGAGCCATCGGATCACGAGCGAGCTGAACCTGAGCGCACTAACGGTGGCGACACTGGTGACCGAACCGAGCGGTGCCAGTCGCTTGTACAGTAGGGTAATAGCAGGTTTAGTTGTAACGATAGTAAGCTATCTGGTCGGTGCCACATCATGGCAGTCGCGACTGTGAGTTTAGTGAATTCGCACGTGCCAAACTAGGGTGTAGGGATGGGAGGGAAATCAGGGATAGAACACACCAAAAGCGTTTGGTTCCATCACTGAAAAAGCCACCAAACTGTGATGCTAGTTCGTAGGTAGCGTAGGAGTACGGGAGCTAGACGGGGGACGTTAGCATTATGACCGGTTGATTCGTTCGTCGTTCGCCAAAGCAAAAAACAACAAGCAGCAATCATTGTCTAGTCTAAGCTTAGCATAATTCATCACTCGTTTGTAAGGAACGATGCCGCAACGCCATATAATTTAACG]
[+] EMBL BX620386 [CGACATCCGTGACACGAGCCTGGGCTACCATGCGAACCTCTGCAGCATGGCATTCGAACGAGCCTCGTACGCGTATCAGGAGAAGTACCGCAAGGTCTGCGAAACCTCGCGCCGCCGTAGTCAGGNGTGCGGCGTGAACGGTGTCACCTATCGGAGCGAATGTGAAGCGTGGAGCGATTACTCCACCGTCGACTACAACGGACCGTGCCAGGAGGTGGGCCTGATCAGCCCCACGCTCGATGCCCGCTGCTCGTCGATCAAGTGTCCGCGGCGAAAGCTGACGAACTGTAATCCGGTGCTGCCACCCGGTGCCTGCTGTCCGGTGTGCGGCACCGCCCTGCGCATCGTGTACTCGCGCAAACAGATCGATCGTGGCCTCTACGCACTGAAGGGTCAGTCGACGGAGTATCTTACGCTCAAGTCGATCTTACGCTCCCTGGAAGCGCTCCTGCAGACGGTCGAATGTCGGCTGAGCGGTCAGCTAACGTTCGAGAACGATCTGTATGTGGTGCTGGAAACGTTGAGCCGAAATCCGTCCCGCCTGCAGACAGAAATTTGTGCGCGGGAAGCGGAACGGCTCGTGACACTGGTGCGCACGCAGAGCCATCGGATCACGAGCGAGCTGAACCTGAGCGCACTAACGGTGGCGACACTGGTG ]
[+] EMBL BX614803 [ AATCCGGTGCTGCCACCCGGTGCCTGCTGTCCGGTGTGCGGCACCGCCCTGCGCATCGTGTACTCGCGCAAACAGATCGATCGTGGCCTCTACGCACTGAAGGGTCAGTCGACGGAGTATCTTACGCTCAAGTCGATCTTACGCTCCCTGGAAGCGCTCCTGCAGACGGTCGAATGTCGGCTGAGTGGTCAGCTAACGTTCGAGAACGATCTGTATGTGGTGCTGGAAACGTTGAGCCGAAATCCGTCCCGCCTGCAGACAGAAATTTGTGCGCGGGAAGCGGAACGGCTCGTGACACTGGTGCGCACGCAGAGCCATCGGATCACGAGCGAGCTGAACCTGAGCGCACTAACGGTGGCGACACTGGTGACCGAACCGAGCGGTGCCAGTCGCTTGTACAGTAGGGTAATAGCAGGTTTAGTTGTAACGATAGTAAGCTATCTGGTCGGTGCCACATCATGGCAGTCGCGACTGTGAGTTTAGTGAATTCGCACGTGCCAAACTAGGGTGTAGGGATGGGAGGGAAATCAGGGATAGAACACACCAAAAGCGTTTGGTTCCATCACTGAAAAAGCCACCAAACTGTGATGCTAGTTCGTAGGTAGCGTAGGAGTACGGGAGCTAGACGGGGGACGTTAGCATTATGACCGGTTGATTCGTTCGTCGTTCGCCAAAGCAAAAAACAACAAGCAGCAATCATTGTCTAGTCTAAGCTTAGCATAATTCATCACTCGTTTGTAAGGAACGATGCCGCAACGCCATATAATTTAACG]
consensusID : consensus_4132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence
[GCAAGAATTGCCTGAGGTTNAAACAGATTGATCTGTGGNCTCTACGCACTGAAGGGTCAGTCGACGGAGTATCTTACGCTCAAGTCGATCTTACGCTCCCTGGAAGCGCTCCTGCAGATGGTCGAATGTCGGCTGAGCGGTCAGCTAACGTTCGAGAACGATCTTGTATGTGGTGCTTGGAAACTGTTGATGTCGAAATCCTGTCCCGCCTGCAGACAGAAATTTTGTGCGCTGGGAAGCTGGAACTGGCTCTGTGACACTGGTGCTGCACTGCAGAGCCATCTGGATCACTGAGCTGAGCTGAACCTGAGCTGCACTAACTGGTGTGCTGACACTTGGTGACCTGAACCTGAGCTGTGTGCCAGTCGCTATGTACAGTAGTGGTAATAGCAGGTTTNAGTATTGTAAAACGATNAGTAAACGCTATCTGGGTCGGGGTGCCACCATTCATTGGGCAAGTCCGCCGGACTGGTGAGCTCTNAGTTGAAATTCGGCACCTGGTTTGCCCAAAACCTTAAAGGGTGGTTGGTAACGGGGGACTTGGGGCGAACGNGGGACACACATTCCAAGGGGTTACTTTGGCAAACCAACAACCCAAAAAAAGNCGGTTNTGGGGTTCCCCAATACAACTTGGAAAGAACAAAGCCAACCAAAAAACTTTGTGGAATTTGGCTAAAGTCTTCGCGACGGNAGTTAGCCGGTAACGGAAGGTTACCTCGGTGTACATGGNCTTAATNAATCGNGGGGTCGGACCNCGTTTCTACAGCCATTTTAAATTTGAGCCCCNGGNGGTNTCGAANTTCCCCCGATCCCGGATGGTTATCCTGGNCTCAAAACACGGCTCAAAAAGACAGACANCAACANCACCACGGCGCAANGGACACGTCCATTNTGGGGTCTCNTAAAGAGTTCATAACACGGGCATATATCGGGAAAGTTTTCCANTCCAACATCCACGTCGCTTGGGNTAGAGTGGACTCGATTTGGACCCACACANCTCGGCGCATCANTTACAANCTTCTACAGCGTGACNTCA]
[+] EMBL AL932086 [GCAAGAATTGCCTGAGGTTNAAACAGATTGATCTGTGGNCTCTACGCACTGAAGGGTCAGTCGACGGAGTATCTTACGCTCAAGTCGATCTTACGCTCCCTGGAAGCGCTCCTGCAGATGGTCGAATGTCGGCTGAGCGGTCAGCTAACGTTCGAGAACGATCTTGTATGTGGTGCTTGGAAACTGTTGATGTCGAAATCCTGTCCCGCCTGCAGACAGAAATTTTGTGCGCTGGGAAGCTGGAACTGGCTCTGTGACACTGGTGCTGCACTGCAGAGCCATCTGGATCACTGAGCTGAGCTGAACCTGAGCTGCACTAACTGGTGTGCTGACACTTGGTGACCTGAACCTGAGCTGTGTGCCAGTCGCTATGTACAGTAGTGGTAATAGCAGGTTTNAGTATTGTAAAACGATNAGTAAACGCTATCTGGGTCGGGGTGCCACCATTCATTGGGCAAGTCCGCCGGACTGGTGAGCTCTNAGTTGAAATTCGGCACCTGGTTTGCCCAAAACCTTAAAGGGTGGTTGGTAACGGGGGACTTGGGGCGAACGNGGGACACACATTCCAAGGGGTTACTTTGGCAAACCAACAACCCAAAAAAAGNCGGTTNTGGGGTTCCCCAATACAACTTGGAAAGAACAAAGCCAACCAAAAAACTTTGTGGAATTTGGCTAAAGTCTTCGCGACGGNAGTTAGCCGGTAACGGAAGGTTACCTCGGTGTACATGGNCTTAATNAATCGNGGGGTCGGACCNCGTTTCTACAGCCATTTTAAATTTGAGCCCCNGGNGGTNTCGAANTTCCCCCGATCCCGGATGGTTATCCTGGNCTCAAAACACGGCTCAAAAAGACAGACANCAACANCACCACGGCGCAANGGACACGTCCATTNTGGGGTCTCNTAAAGAGTTCATAACACGGGCATATATCGGGAAAGTTTTCCANTCCAACATCCACGTCGCTTGGGNTAGAGTGGACTCGATTTGGACCCACACANCTCGGCGCATCANTTACAANCTTCTACAGCGTGACNTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4132#0 ---CGACATCCGTGACACGAGCCTGGGCTACCATGCGAAC-CTCTGCAGCATGG---CAT 53
consensus_4132#1 GCAAGAATTGCCTGAGGTTNAAACAGATTGATCTGTGGNCTCTACGCACTGAAGGGTCAG 60
** * * *** * * ** * * ** *** * **
consensus_4132#0 TCGAACGAGCCTCGTACGCGTATCAGGAGAAGTACCGCAAGGTCTGCGAAACCTCGCGCC 113
consensus_4132#1 TCGACGGAGTATCTTACGC---TCAAGTCGA-TCTTACGCTCCCTGGAAGCGCTCCTGCA 116
**** *** ** ***** *** * * * * *** * *** **
consensus_4132#0 GCCGTAGTCAGGNGTGCGGCGTGAACGGT--GTCACCTATCGGAGCGAATGTGAAGCGTG 171
consensus_4132#1 G--ATGGTCGAATGT-CGGC-TGAGCGGTCAGCTAACGTTCGAGAACGATCTTGTATGTG 172
* * *** ** **** *** **** * * * *** ** * ***
consensus_4132#0 GAGCGATTACTCCACCGTCGACTACAACGGACCGTGCCAGGAGGTGGGCCTGATCAGCCC 231
consensus_4132#1 GTGCTTGGAAACTGTTGATGTCGAAATCCTGTCCCGCCTGCAGACAGAAATTTTGTGCGC 232
* ** * * * * * * * * * *** * ** * * * ** *
consensus_4132#0 CACGC--TCGATGCCCGCTGCTCGTCGATCAAGTGTCCGCGGCGAAAGCTGACGAACTGT 289
consensus_4132#1 TGGGAAGCTGGAACTGGCTCTGTGACACTGGTGC-TGCACTGCAGAGCCATCTGGATCAC 291
* * * *** * * * * * * * ** * * * *
consensus_4132#0 AATCCGGTGCTGCCACCCGGTGCCTGCTGTCCGGTGTGCGGCACCGCCCTGCGCATCGTG 349
consensus_4132#1 TGAGCTGAGCTGA-ACCTGAGCTGCACTAACTGGTGTGCTG----ACACTTGGTGACCTG 346
* * **** *** * ** * ******* * * ** * * **
consensus_4132#0 TACTCGCGCAAACAGATCGATCGTGGCCTCTACGCACTG--AAGGGTCAGTCGACGGAGT 407
consensus_4132#1 AACCTGAGCTG-TGTGCCAGTCGCTATGTACA-GTAGTGGTAATAGCAGGTTTNAGTATT 404
** * ** * *** * * * * ** ** * ** * * *
consensus_4132#0 ATCTTACGCTCAAGTCGATCTTACGCTCCCTGGAAGCGCTCCTGCAGACGGTCGAATGTC 467
consensus_4132#1 GTAAAACGATNA-GTAAACGCTAT-CTGGGTCGGGGTGCCACCATTCATTGGGCAAGTCC 462
* *** * * ** * ** ** * * * ** * * * ** *
consensus_4132#0 GGCTGAGCGGTCAGCTAACGTTCGAGAACGATCTGTATGTGGT--GCTGGAAACGTTGAG 525
consensus_4132#1 GCCGGACTGGTGAGCTCTNAGTTGAAA---TTCGGCACCTGGTTTGCCCAAAACCTTAAA 519
* * ** *** **** * ** * ** * * **** ** **** ** *
consensus_4132#0 CCGAAATCCGTCCCGCCTGCAGACAGAAATTTGTGCGCGGGAAGCGGAACGGCTCGTGAC 585
consensus_4132#1 GGGTGGTTGGTAACGG--GGGACTTGGGGCGAACGNGGGACACACATTCCAAGGGGTTAC 577
* * ** ** * * * * * * * * ** **
consensus_4132#0 ACTGGTGCGCACGCAGAGCCATCGGATCACGAGCGAGCTGAACCTGAGCGCACTAACGGT 645
consensus_4132#1 TTTGGCAAACCAACA-ACCCAAAAAAAGNCGGTTNTGGGGTTCCCCAATACAACT-TGGA 635
*** * ** * *** * ** * * ** * ** **
consensus_4132#0 GGCGACACTGGTGACCGAACCGAGCGGTGCCAGTCGCTTGTACAGTAGGGTAATAGCAGG 705
consensus_4132#1 AAGAACAAAGCCAACCAAAAAACTTTGTGGAATTTGGCTAAAGTCTTCG-CGACGGNAG- 693
*** * *** ** *** * * * * * * * * * **
consensus_4132#0 TTTAGTTGTAACGATAGTAAGCTATCTGGTCGGTGCCACATCATGGCAGTCGCGACTGTG 765
consensus_4132#1 -TTAGCCG--GTAACGGAAGGTTACCTCGGTGTACATGGNCTTAATNAATCGNGGGGTCG 750
**** * * * * * ** ** * * * *** * *
consensus_4132#0 AGTTTAGTGAATTCGCACGTGCCAAACTAGGGTGTAGGGATGGGAGGGAAATCAGG-GAT 824
consensus_4132#1 GACCNCGTTTCTACAGCCATTTTAAATTTGAGCCCCNGGNGGTNTCGAANTTCCCCCGAT 810
** * * * * *** * * * ** * * * ** ***
consensus_4132#0 AGAACACACCAAAAGCG-TTTGGTTCCATCACTGAAAAAGCCACCAAACTGTGATGCTAG 883
consensus_4132#1 CCCGGATGGTTATCCTGGNCTCAAAACACGGCTCAAAAAGACAGACANCAACANCACCAC 870
* * * * ** ** ****** ** * * * *
consensus_4132#0 TTCGTAGGTAGCGTAGGAGTACGGGAGCTAGACGGGGGACGTTAGCATTATGACCGGTTG 943
consensus_4132#1 GGCGCAANGGACACGTCCATTNTGGGGTCTCNTAAAGA--GTTCATAACACGGGCATATA 928
** * * * ** * * *** * * * * *
consensus_4132#0 ATTCGTTCGTCGTTCGCCAAAGCAAAAAACAACAAGCAGCAATCATTGTCTAGTCTAAGC 1003
consensus_4132#1 TCGGGAAAGTTTTCCANTCCAACATCCACGTCGCTTGGGNTAGAGTGGACTCGATTTGGA 988
* ** * * * ** * * * * * ** * * *
consensus_4132#0 TTAGCATAATTCATCAC-TCGTTTGTAAGGAACGATGCCGCAACGCCATATAATTTAACG 1062
consensus_4132#1 CCCACACANCTCGGCGCATCANTTACAANCTTCTACAGCGTGACNTCA------------ 1036
** * ** * * ** ** ** * * ** ** **
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||