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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence
[CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGCGTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAACTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGAAATATAAAA]
[+] EMBL BX627923 [CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGCGTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTT ]
[+] EMBL BX612777 [ ACCTTGCGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACAATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAACTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGAAATATAAAA]
consensusID : consensus_4134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence
[CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCTAGGTGCACG]
[+] EMBL BX466575 [CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCTAGGTGCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4134#0 CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGC 60
consensus_4134#1 ------------------------------------------------------------
consensus_4134#0 GTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGAC 120
consensus_4134#1 ----------------------CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGAC 38
* ** * * * * * **************
consensus_4134#0 GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG 180
consensus_4134#1 GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG 98
************************************************************
consensus_4134#0 GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA 240
consensus_4134#1 GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA 158
************************************************************
consensus_4134#0 AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG 300
consensus_4134#1 AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG 218
************************************************************
consensus_4134#0 ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA 360
consensus_4134#1 ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA 278
************************************************************
consensus_4134#0 AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA 420
consensus_4134#1 AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA 338
************************************************************
consensus_4134#0 ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATA 480
consensus_4134#1 ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTT-GAGAAACAATA 397
************************************************ ***********
consensus_4134#0 AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAA-CTGATT 539
consensus_4134#1 AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATT 457
***************************************************** ******
consensus_4134#0 CAAACTACGATTCGTACAAAATTTGCCCAC-TGCACAGTATTAACNATTGCGCATCGATT 598
consensus_4134#1 CAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATT 517
****************************** ************** **************
consensus_4134#0 AAACAC--GGTTATGGACAGTGATAGAGTGTT-GGTGATGGACGCTGGACGCGTAGTCGA 655
consensus_4134#1 NAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGA 577
** ** ************************ ***************************
consensus_4134#0 GTTTGGG-CATCCGCATGAGCTTCTGCACGGTCCGATTGGC-TATCTA-CGGCGACTAGT 712
consensus_4134#1 GTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGT 637
******* ********************************* ****** ***********
consensus_4134#0 GGACCAAA-CTGGTGTTGCTACGGCA---GCAATGTT--GATGCGTA--CTGCTGAGG-A 763
consensus_4134#1 GGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGA 697
******** ***************** ****** ******** ******** *
consensus_4134#0 TA-ATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAG 822
consensus_4134#1 TACGTTNTAANACAGANAATTCTAGGTGCACG---------------------------- 729
** ** *** * * * * * ** ***
consensus_4134#0 ACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTAC 882
consensus_4134#1 ------------------------------------------------------------
consensus_4134#0 AGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAA 942
consensus_4134#1 ------------------------------------------------------------
consensus_4134#0 GATTGAAATCAATAAAGAAATATAAAA 969
consensus_4134#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||