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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence
[AGATCCCCGAGGTTANTAAACACCCAACAATATCCACCGAAAGCGCTGAAAATCTACAGCAAAGAACGCGTGGGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGTGATTTTTTGAGCTCATTTCAAAATCAAAATAATCTACACATTGGATTAACATCATCCAATGGAACGATCTATGAGTTCGACGTTCAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCTTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTG-TGGAACAGATTTCAACTGATCAGTCATGGAGCGANAGAGATGTACGAGAAAGACTCCCACAACTGCTACTCATTTGTATTAGGC-TTCTGAAAGCACTGGAGTATGGAGAA-TTTCGGCGCTTTGTCATGACAAATTATTGTTCAGTGAGAAGATCGTGGCTTCCAAGACACAAAATGCTGCTAAGTACATCACCATTCATCGCAAGCTTCAAGGATGCAATTATTTCACCGAAGAACAGGAATGAGAAACTATGGACTGATAGTAGTAACAAGAAACTGACTGTGATCCGTAAGCCGTATTTCTATGTGGAGCTATCCGAAGCTTTGTATTATCTTTTGTAATAAAAGTGATTTGACTGTAACCAGATAAAATATGAAAAAAAAAAAAA]
[+] EMBL AL934773 [AGATCCCCGAGGTTANTAAACACCCAACAATATCCACCGAAAGCGCTGAAAATCTACAGCAAAGAACGCGTGGGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGTGATTTTTTGAGCTCATTTCAAAATCAAAATAATCTACACATTGGATTAACATCATCCAATGGAACGATCTATGAGTTCGACGTTCAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCTTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTG TGGAACAGATTTCAACTGATCAGTCATGGAGCGANAGAGATGTACGAGAAAGACTCCCACAACTGCTACTCATTTGTATTAGGC TTCTGAAAGCACTGGAGTATGGAGAA TTTCGGC ]
[-] EMBL CNS096UU [ GACGTT AAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCCAATCGTGGTACGACCAATGGGATGAGGTGTTGGAACAGATTTCAACTGATCAGTCGTGGAGCGA AGAGATGTACGAAAAAGACTCCCACCACTGCTACTCATTTGTATTAGGCTTTCTGAAAGCACTGGAGTATGGAGAATTTTCGGCGCTTTGTCATGACAAATTATTGTTCAGTGAGAAGATCGTGGCTTCCAAGACACAAAATGCTGCTAAGTACATCACCATTCATCGCAAGCTTCAAGGATGCAATTATTTCACCGAAGAACAGGAATGAGAAACTATGGACTGATAGTAGTAACAAGAAACTGACTGTGATCCGTAAGCCGTATTTCTATGTGGAGCTATCCGAAGCTTTGTATTATCTTTTGTAATAAAAGTGATTTGACTGTAACCAGATAAAATATGAAAAAAAAAAAAA]
consensusID : consensus_4142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[TTCGCGCTGTGATTACATGCTCTTGTGCATTTTCCGTGCAAGCATTCTAAACACCCAACGATATCCATCCAAAGCGTTGAAAATCTACAGCAAATAACGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGAGATTTTTTGAGCTCTTTTCAAAATCAAAATAATCTACACATTGGATTAACATCGTCCAATGGAACGATCTATGAGTTCGACGTTAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTGTTGGAACAGATTTAAAATGATCAGTCGTGGAGCGAAGAGATGTACGAAAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT]
[+] EMBL CNS096UT [TTCGCGCTGTGATTACATGCTCTTGTGCATTTTCCGTGCAAGCATTCTAAACACCCAACGATATCCATCCAAAGCGTTGAAAATCTACAGCAAATAACGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGAGATTTTTTGAGCTCTTTTCAAAATCAAAATAATCTACACATTGGATTAACATCGTCCAATGGAACGATCTATGAGTTCGACGTTAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTGTTGGAACAGATTTAAAATGATCAGTCGTGGAGCGAAGAGATGTACGAAAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4142#0 ----------------------------AGATCCC---CGAGGTTANTAAACACCCAACA 29
consensus_4142#1 TTCGCGCTGTGATTACATGCTCTTGTGCATTTTCCGTGCAAGCATTCTAAACACCCAACG 60
* * ** * ** * ************
consensus_4142#0 ATATCCACCGAAAGCGCTGAAAATCTACAGCAAAGAACGCGTGGGAAAGGAAGATGTTTG 89
consensus_4142#1 ATATCCATCCAAAGCGTTGAAAATCTACAGCAAATAACG------AAAGGAAGATGTTTG 114
******* * ****** ***************** **** ***************
consensus_4142#0 ATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCT 149
consensus_4142#1 ATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCT 174
************************************************************
consensus_4142#0 TAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCA 209
consensus_4142#1 TAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCA 234
************************************************************
consensus_4142#0 CGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGT 269
consensus_4142#1 CGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGT 294
************************************************************
consensus_4142#0 CTGTGGGTGATTTTTTGAGCTCATTTCAAAATCAAAATAATCTACACATTGGATTAACAT 329
consensus_4142#1 CTGTGGGAGATTTTTTGAGCTCTTTTCAAAATCAAAATAATCTACACATTGGATTAACAT 354
******* ************** *************************************
consensus_4142#0 CATCCAATGGAACGATCTATGAGTTCGACGTTCAAAGGTTTAGTGAAAACACCATTCAAT 389
consensus_4142#1 CGTCCAATGGAACGATCTATGAGTTCGACGTT-AAAGGTTTAGTGAAAACACCATTCAAT 413
* ****************************** ***************************
consensus_4142#0 AATAGGACCGTGGCCTTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTA 449
consensus_4142#1 AATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTA 473
*************** ********************************************
consensus_4142#0 CCCGAATCGTGGTACGACCGATGGGATGAGGTGT-GGAACAGATTTCAACTGATCAGTCA 508
consensus_4142#1 CCCGAATCGTGGTACGACCGATGGGATGAGGTGTTGGAACAGATTTAAAATGATCAGTCG 533
********************************** *********** ** *********
consensus_4142#0 TGGAGCGANAGAGATGTACGAGAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT 568
consensus_4142#1 TGGAGCGAA-GAGATGTACGAAAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT 592
******** *********** **************************************
consensus_4142#0 CTGAAAGCACTGGAGTATGGAGAATTTCGGCGCTTTGTCATGACAAATTATTGTTCAGTG 628
consensus_4142#1 ------------------------------------------------------------
consensus_4142#0 AGAAGATCGTGGCTTCCAAGACACAAAATGCTGCTAAGTACATCACCATTCATCGCAAGC 688
consensus_4142#1 ------------------------------------------------------------
consensus_4142#0 TTCAAGGATGCAATTATTTCACCGAAGAACAGGAATGAGAAACTATGGACTGATAGTAGT 748
consensus_4142#1 ------------------------------------------------------------
consensus_4142#0 AACAAGAAACTGACTGTGATCCGTAAGCCGTATTTCTATGTGGAGCTATCCGAAGCTTTG 808
consensus_4142#1 ------------------------------------------------------------
consensus_4142#0 TATTATCTTTTGTAATAAAAGTGATTTGACTGTAACCAGATAAAATATGAAAAAAAAAAA 868
consensus_4142#1 ------------------------------------------------------------
consensus_4142#0 AA 870
consensus_4142#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||