These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CCGAAATCACTGAAACTGTAACAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAACGATTGGTGAGTGCGCGGGTGGCGAAGGACTGGAGTGAAAACCCGTAAACTGCAGGTGTCCCAAGCAGCACCAC------CAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAACACTGATAGATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAATCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGAGAGG----GAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATATTTTATAAACTCTAGGTTTTTTTATATATAAAAATATT] [+] EMBL BM587103 [CCGAAATCACTGAAACTGTAACAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAACGATTGGTGAGTGCGCGGGTGGCGAAGGACTGGAGTGAAAACCCGTAAACTGCAGGTGTCCCAAGCAGCACCAC CAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAACACTGATAGATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAATCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGAGAGG GAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATATTTTATAAACTCTAGGTTTTTTTATATATAAAAATATT] [+] EMBL BM630509 [ ccgTGAAACTGTAAC AAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAGCGATTGGTGAGTGCGCGGGTGGCGAAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGTAAACACTGATAAATCCCGCCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAATCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAATAATCCCCCGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATAT ] consensusID : consensus_4146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGAAACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAGCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTCGATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATCAATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAATGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAACGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG] [+] EMBL BX469273 [GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGAAACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAGCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTCGATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATCAATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAATGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAACGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4146#0 -----------------------------------------------CCGAAATCACTGA 13 consensus_4146#1 GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGA 60 ****** *** consensus_4146#0 AACTGTAACAAAAAAAAAAAA-CAATCCAAAACCACACACTATTAGCCGGACAGTAGAGA 72 consensus_4146#1 AACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGA 120 ********************* ************************************** consensus_4146#0 ACGATTGGTGAGTGCGCGGGTGGCGA-AGGACTGGAGTGAAAACCCGTAAACTGCAGGTG 131 consensus_4146#1 GCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTG 180 ************************* *** *********** ***** *** ******* consensus_4146#0 TCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAG-CATTTCGTC 190 consensus_4146#1 TCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTC 240 ************************************************** ********* consensus_4146#0 GATATGTTCGA-AGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAA-ACA-CTGATA 247 consensus_4146#1 GATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATC 300 *********** ************************************* *** ***** consensus_4146#0 GATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAA- 306 consensus_4146#1 AATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAA 360 ****** ******** **************************************** * consensus_4146#0 --TGCAAAATGCA--AGTGAG-AGCACCGTT-GCAAG---TGTTTTGAATTGGCGGTTAA 357 consensus_4146#1 TGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAA 420 * **** **** ***** ********* ***** * * *************** consensus_4146#0 GAA--TCGGACCTACTTT-CATCAG-GATGGC--AATTAACATCGGTGCATCTGTACAAG 411 consensus_4146#1 CGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG-------------- 466 * ************ ****** ****** * ********** consensus_4146#0 GAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGT 471 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 GTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCG 531 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 TCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGA 591 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 GAGGGAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCT 651 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 ATATTTTATAAACTCTAGGTTTTTTTATATATAAAAATATT 692 consensus_4146#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||