cluster # 4151

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Anopheles gambiae
cluster # 4151 cluster # 4151 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4151#0 length = 792 sequences # 2

consensus_4151#1 length = 559 sequences # 1

consensusID : consensus_4151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 792
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGACAATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTCGCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCTTTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGTGTGGATGATTTG]

[+] EMBL BM635666             [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGACAATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTCGCCTGGTACAATGGACTGCCCGGGTTT                                                                                                         ]
[+] EMBL BM592460             [                                                                           ccgAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGCAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTTACGTATGGTGCGGAGCAGGACAATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTCGCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCTTTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGTGTGGATGATTTG]




>consensus_4151#0
CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCA
CGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGT
TACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAAT
TGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCG
GTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCA
CGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAA
CATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTG
AGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAA
ACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACC
CTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGAC
AATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTC
GCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCT
TTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGT
GTGGATGATTTG

consensusID : consensus_4151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [AGAATCGCCCGAGGTTTCACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGGCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTG]

[+] EMBL AL931607             [AGAATCGCCCGAGGTTTCACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGGCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTG]




>consensus_4151#1
AGAATCGCCCGAGGTTTCACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCT
GATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTT
GCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGT
TTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGC
AAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTA
GGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCC
GACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCA
CCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGGCGAGAACCCG
CGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGA
GAACGATATCATGCTGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4151#0      CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCA 60
consensus_4151#1      --------AGAATCGCCCGAGGTTTC------ACATTCGTCACGCTTTTACGACCCTCCA 46
                                   *****  *  * *      ****************************

consensus_4151#0      CGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGT 120
consensus_4151#1      CGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGT 106
                      ************************************************************

consensus_4151#0      TACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAAT 180
consensus_4151#1      TACATTATCGTTTT-GCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAAT 165
                      ************** *********************************************

consensus_4151#0      TGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCG 240
consensus_4151#1      TGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCG 225
                      ************************************************************

consensus_4151#0      GTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCA 300
consensus_4151#1      GTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCA 285
                      ************************************************************

consensus_4151#0      CGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAA 360
consensus_4151#1      CGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAA 345
                      ************************************************************

consensus_4151#0      CATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTG 420
consensus_4151#1      CATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTG 405
                      ************************************************************

consensus_4151#0      AGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAA 480
consensus_4151#1      AGATTCGGCGTTGCACCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAA 465
                      ******************** ***************************************

consensus_4151#0      ACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACC 540
consensus_4151#1      ACGGGCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACC 525
                      **** *******************************************************

consensus_4151#0      CTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGAC 600
consensus_4151#1      CTAGAAGAGCTGCGAGAACGATATCATGCTGTTG-------------------------- 559
                      *********************************                           

consensus_4151#0      AATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTC 660
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      GCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCT 720
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      TTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGT 780
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      GTGGATGATTTG 792
consensus_4151#1      ------------