These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTGTCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGCGGCGACCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCAACTATCTGTTCGTGTCGGGCCATCAGCGGCGGCCGGCGGCCGGCACCGAGACGGACAGCGTGGGAACGGACGGGTCGCGGGAGCAGCTGGCCGCGCGCCACGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTGCCTGCCCCTGCCACCGACCAGCAGCAG] [+] EMBL BM639238 [CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTGTCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGCGGCGACCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCAACTATCTGTTCGTGTCGGGCCATCAGCGGCGGCCGGCGGCCGGCACCGAGACGGACAGCGTGGGAACGGACGGGTCGCGGGAGCAGCTGGCCGCGCGCCACGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTGCCTGCCCCTGCCACCGACCAGCAGCAG] consensusID : consensus_4154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACACACCGCGCGTCCCATGCATCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCGCTCCCGCCGCCGAGACGAAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTGTGGCACCGGCCGCCCCCAGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTGCCGCTCGGCCGAGGCAGCAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACCGGCAGTCGATGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTACCGTATTGGGGTAGAGTGGGGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGC] [+] EMBL BM577765 [CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACACACCGCGCGTCCCATGCATCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCGCTCCCGCCGCCGAGACGAAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTGTGGCACCGGCCGCCCCCAGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTGCCGCTCGGCCGAGGCAGCAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACCGGCAGTCGATGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTACCGTATTGGGGTAGAGTGGGGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGC] consensusID : consensus_4154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [CGAGCGGCGACGGTGACGGCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCACTATCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCGGGCCCCGGCAAACCCGAGACGGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGCCCGCGCGCCCCGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCC] [+] EMBL AL930032 [CGAGCGGCGACGGTGACGGCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCACTATCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCGGGCCCCGGCAAACCCGAGACGGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGCCCGCGCGCCCCGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4154#0 CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGAC 60 consensus_4154#2 ------------------------------------------------------------ consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAG 120 consensus_4154#2 ------------------------------------------------------------ consensus_4154#1 -----------------CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACAC 43 consensus_4154#0 GCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTAC 180 consensus_4154#2 ------------------------------------------------------------ consensus_4154#1 ACCGCGCGTCCCATGCATCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCG 103 consensus_4154#0 GCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACG 240 consensus_4154#2 ------------------------------------------------------------ consensus_4154#1 CTCCCGCCGCCGAGACGAAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTG 163 consensus_4154#0 ACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTG 300 consensus_4154#2 ------------------------------------------------------------ consensus_4154#1 TGGCACCGGCCGCCCCCAGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTG 223 consensus_4154#0 TCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGC--GGC 358 consensus_4154#2 --------------------------------------------------CGAGC--GGC 8 consensus_4154#1 CCGCTCGGCCGAGGCAGCAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACC 283 * *** * consensus_4154#0 GACCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAG-----GACGTCAACTA 413 consensus_4154#2 GAC-GGTGACGGCC-GCAGCTGCAGCAACTACGACGACTACGAG-----GACGTCA-CTA 60 consensus_4154#1 GGCAGTCGATGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCA-CTG 342 * * * ** ** * * *** **** * * **** * ** ** ** consensus_4154#0 TCTGTTCGT-GTCGGGCCATCAGC----GGCGG-CCGGCG-------G---CCGGCA--- 454 consensus_4154#2 TCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCG-------GGCCCCGGCAAAC 113 consensus_4154#1 ACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTAC 402 * * ** ***** ** * * ** * ** ** consensus_4154#0 CCGAGACGGACAGCG---TGGGAACGGACGGGTC--GCGGGAGCAGCTGGC--C-GCGCG 506 consensus_4154#2 CCGAGACGGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGC--CCGCGCG 171 consensus_4154#1 CGTATTGGGGTAGAGTGGGGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTC 462 * * ** ** * * * * * * * *** * *** * ** consensus_4154#0 CCACGAATCCTA--CGGCGAGGAGCACATCTACGAGC-----------CGATACTAGTCG 553 consensus_4154#2 CCCCGAATCCTA--CGGCGAGGAGCACATCTACGAGC-----------CGATACTAGTCG 218 consensus_4154#1 CCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCG 522 ** * * * * * ****** *** * ****** * * * * ** consensus_4154#0 CCGAA--CGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTGCCTGCCCCTGC 611 consensus_4154#2 CCGAA--CGGATACCGACCGTCCCGACGAGCGGATCC----------------------- 253 consensus_4154#1 CTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTT 582 * * * **** ** * *** * * * * consensus_4154#0 CACCGACCAGCAGCAG--------------- 627 consensus_4154#2 ------------------------------- consensus_4154#1 GCCCGCACTCTGCACCCGACGACCGCCACGC 613 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||