cluster # 4154

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Anopheles gambiae
cluster # 4154 cluster # 4154 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4154#0 length = 627 sequences # 1

consensus_4154#1 length = 613 sequences # 1
consensus_4154#2 length = 253 sequences # 1

consensusID : consensus_4154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTGTCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGCGGCGACCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCAACTATCTGTTCGTGTCGGGCCATCAGCGGCGGCCGGCGGCCGGCACCGAGACGGACAGCGTGGGAACGGACGGGTCGCGGGAGCAGCTGGCCGCGCGCCACGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTGCCTGCCCCTGCCACCGACCAGCAGCAG]

[+] EMBL BM639238             [CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTGTCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGCGGCGACCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCAACTATCTGTTCGTGTCGGGCCATCAGCGGCGGCCGGCGGCCGGCACCGAGACGGACAGCGTGGGAACGGACGGGTCGCGGGAGCAGCTGGCCGCGCGCCACGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTGCCTGCCCCTGCCACCGACCAGCAGCAG]




>consensus_4154#0
CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGAC
GGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAG
GCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTAC
GCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACG
ACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTG
TCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGCGGCGA
CCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCAACTATCTGTTC
GTGTCGGGCCATCAGCGGCGGCCGGCGGCCGGCACCGAGACGGACAGCGTGGGAACGGAC
GGGTCGCGGGAGCAGCTGGCCGCGCGCCACGAATCCTACGGCGAGGAGCACATCTACGAG
CCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTG
CCTGCCCCTGCCACCGACCAGCAGCAG

consensusID : consensus_4154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACACACCGCGCGTCCCATGCATCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCGCTCCCGCCGCCGAGACGAAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTGTGGCACCGGCCGCCCCCAGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTGCCGCTCGGCCGAGGCAGCAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACCGGCAGTCGATGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTACCGTATTGGGGTAGAGTGGGGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGC]

[+] EMBL BM577765             [CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACACACCGCGCGTCCCATGCATCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCGCTCCCGCCGCCGAGACGAAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTGTGGCACCGGCCGCCCCCAGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTGCCGCTCGGCCGAGGCAGCAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACCGGCAGTCGATGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTACCGTATTGGGGTAGAGTGGGGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTCCCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACGACCGCCACGC]




>consensus_4154#1
CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACACACCGCGCGTCCCATGCA
TCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCGCTCCCGCCGCCGAGACG
AAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTGTGGCACCGGCCGCCCCC
AGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTGCCGCTCGGCCGAGGCAG
CAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACCGGCAGTCGATGGACGTG
TGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGACGGTACGGCC
AGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTACCGTATTGGGGTAGAGTGG
GGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTCCCCCCAGCCGTCGCCTGC
GAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATC
TACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCG
ACGACCGCCACGC

consensusID : consensus_4154#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [CGAGCGGCGACGGTGACGGCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCACTATCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCGGGCCCCGGCAAACCCGAGACGGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGCCCGCGCGCCCCGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCC]

[+] EMBL AL930032             [CGAGCGGCGACGGTGACGGCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCACTATCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCGGGCCCCGGCAAACCCGAGACGGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGCCCGCGCGCCCCGAATCCTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCCGACGAGCGGATCC]




>consensus_4154#2
CGAGCGGCGACGGTGACGGCCGCAGCTGCAGCAACTACGACGACTACGAGGACGTCACTA
TCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCGGGCCCCGGCAAACCCGAGAC
GGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGCCCGCGCGCCCCGAATC
CTACGGCGAGGAGCACATCTACGAGCCGATACTAGTCGCCGAACGGATACCGACCGTCCC
GACGAGCGGATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4154#0      CCGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCACTGACCCTGGAC 60
consensus_4154#2      ------------------------------------------------------------
consensus_4154#1      ------------------------------------------------------------
                                                                                  

consensus_4154#0      GGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGCTTCCCCCCAGCCGTCGCCTGCGAG 120
consensus_4154#2      ------------------------------------------------------------
consensus_4154#1      -----------------CCGCCCACGCGTCCGGTGTTGTTCTCGCTCGTTGATCAAACAC 43
                                                                                  

consensus_4154#0      GCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCGCTGGAGCCGGAACCCATCTAC 180
consensus_4154#2      ------------------------------------------------------------
consensus_4154#1      ACCGCGCGTCCCATGCATCCCGCGCCAGCCGGTCGGAGTCTGCTGCCGGCGAATCGAGCG 103
                                                                                  

consensus_4154#0      GCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTTGCCCGCACTCTGCACCCGACG 240
consensus_4154#2      ------------------------------------------------------------
consensus_4154#1      CTCCCGCCGCCGAGACGAAGGGTGCCGATCGCTTCGAGGGTGTCGATGAGGAGGGCGTTG 163
                                                                                  

consensus_4154#0      ACCGCCACGCCGGCCGGAAGCGAACGTACCGACGGTGGCGGTGGCGGCACTCGGAAGGTG 300
consensus_4154#2      ------------------------------------------------------------
consensus_4154#1      TGGCACCGGCCGCCCCCAGACGACCCCGGCCCGAAGGGAGGGAGGAAGGGCTGGAACGTG 223
                                                                                  

consensus_4154#0      TCCGTCTCGCTGCCCCAGATATCGGACGGCGTCGAGCTGGCCACCGTCACCGAGC--GGC 358
consensus_4154#2      --------------------------------------------------CGAGC--GGC 8
consensus_4154#1      CCGCTCGGCCGAGGCAGCAGATCTTTCGACTGCACCAGGACGTTTGGAGCCAAGCTCACC 283
                                                                        * ***    *

consensus_4154#0      GACCGGTGACGGCCCGCAGCTGCAGCAACTACGACGACTACGAG-----GACGTCAACTA 413
consensus_4154#2      GAC-GGTGACGGCC-GCAGCTGCAGCAACTACGACGACTACGAG-----GACGTCA-CTA 60
consensus_4154#1      GGCAGTCGATGGACGTGTGTCGCATCAACAGCATGTTCAGCGAGCGGCAGCCGGCA-CTG 342
                      * * *  ** ** *    *  *** ****  *     *  ****     * ** ** ** 

consensus_4154#0      TCTGTTCGT-GTCGGGCCATCAGC----GGCGG-CCGGCG-------G---CCGGCA--- 454
consensus_4154#2      TCTGTTCGTTGTCGGGCCATCAGCCGGGGGCGNGCCGGCG-------GGCCCCGGCAAAC 113
consensus_4154#1      ACCCTGGACGGTACGGCCAGTAGTGCCAGCTCGGCTGGAGTAAGGTAAGGTCCCGCGTAC 402
                       *  *     **  *****  **     *     * ** *           ** **    

consensus_4154#0      CCGAGACGGACAGCG---TGGGAACGGACGGGTC--GCGGGAGCAGCTGGC--C-GCGCG 506
consensus_4154#2      CCGAGACGGACAGCGGGTTGGGAACGGACGGGTCCGGCGGGAGCAGCTGGC--CCGCGCG 171
consensus_4154#1      CGTATTGGGGTAGAGTGGGGTGTAAAAAAGAAACCACTTGGACCGGCTATTTGCAGCTTC 462
                      *  *   **  ** *    * * *   * *   *     *** * ***     * **   

consensus_4154#0      CCACGAATCCTA--CGGCGAGGAGCACATCTACGAGC-----------CGATACTAGTCG 553
consensus_4154#2      CCCCGAATCCTA--CGGCGAGGAGCACATCTACGAGC-----------CGATACTAGTCG 218
consensus_4154#1      CCCCCAGCCGTCGCCTGCGAGGCGCATCTGTACGAGGATGTCGGTGGGCCGTGCCCGGCG 522
                      ** * *  * *   * ****** ***  * ******            *  * *  * **

consensus_4154#0      CCGAA--CGGATACCGACCGTCCCGACGAGCGGATCCTCCTCGTCCCTGCCTGCCCCTGC 611
consensus_4154#2      CCGAA--CGGATACCGACCGTCCCGACGAGCGGATCC----------------------- 253
consensus_4154#1      CTGGAGCCGGAACCCATCTACGCCGTGGTGGACGTGCGGGCGAAGCGATCCCGGCGGCTT 582
                      * * *  ****  **  *    ***  * *    * *                       

consensus_4154#0      CACCGACCAGCAGCAG--------------- 627
consensus_4154#2      -------------------------------
consensus_4154#1      GCCCGCACTCTGCACCCGACGACCGCCACGC 613