These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CCACGCGTCCGATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTGCAAGGTCGATGCAAGGTGCAGTCCCTCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGT] [+] EMBL BM636395 [CCACGCGTCCGATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTGCAAGGTCGATGCAAGGTGCAGTCCCTCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGT] consensusID : consensus_4161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGCGCTGGTGTACCATCGTCTTCGATGTCGCTGAAACATGTTCCAATAAAAGCAATAGTATTTTCGGACGAATCTTTGCCAAGTATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCA] [+] EMBL BM639925 [CCGCGCTGGTGTACCATCGTCTTCGATGTCGCTGAAACATGTTCCAATAAAAGCAATAGTATTTTCGGACGAATCTTTGCCAAGTATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCA] consensusID : consensus_4161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [CCCCGAGGTTGATACGAGTGGACATCGGGTGCTAGTAGACAATTACCTGCCTATCCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGGGTTCAGCATTCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTATCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTTGGATCGATGCAAGGTGCAGTCCGCCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGTGTATGGAAGCAATAACCCTCTCCCTCCCCCACGGTGTACGTTAGTGGTGTACTTCGAAGGACAATGTAATGTTTGTGCATAGATCAATAATGAAACACATTCTGCGGGAGTGAGGCGAA] [+] EMBL AL930867 [CCCCGAGGTTGATACGAGTGGACATCGGGTGCTAGTAGACAATTACCTGCCTATCCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGGGTTCAGCATTCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTATCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTTGGATCGATGCAAGGTGCAGTCCGCCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGTGTATGGAAGCAATAACCCTCTCCCTCCCCCACGGTGTACGTTAGTGGTGTACTTCGAAGGACAATGTAATGTTTGTGCATAGATCAATAATGAAACACATTCTGCGGGAGTGAGGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4161#0 ------------------------------------------------------------ consensus_4161#1 CCGCGCTGGTGTACCATCGTCTTCGATGTCGCTGAAACATGTTCCAATAAAAGCAATAGT 60 consensus_4161#2 -----------------------------CCCCGAGGTTGATACGAGTGGACATCG-GGT 30 consensus_4161#0 --------------CCACGCGTCCGATCGATGGCGGTACGGTTTCGTCGCATTTACGCCC 46 consensus_4161#1 ATTTTCGGACGAATCTTTGCCAAGTATCGATGGCGGTACGGTTTCGTCGCATTTACGCCC 120 consensus_4161#2 GCTAGTAGACAATTACCTGCCTA-TCCCGCCGGCGGTTTCACTAC-CAAAGCCTAC-CCC 87 ** ** ****** * * *** *** consensus_4161#0 TGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCG----GTGCTTGAAAG 102 consensus_4161#1 TGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCG----GTGCTTGAAAG 176 consensus_4161#2 TATTTGGGTTGCAGCCGGGGTTCAGCATTCAGCAGGTGGTAGCAGTAGTGTGATTAGTAG 147 * * * * ** ** * ** * ** * * * *** ** ** consensus_4161#0 CTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGT 162 consensus_4161#1 CTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGT 236 consensus_4161#2 TGGCGCGCTATCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCAT 207 *** * * * * * * * *** * ** * *** * ** *** * consensus_4161#0 CGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCAC 222 consensus_4161#1 CGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCAC 296 consensus_4161#2 CGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCAC 267 ** * ******* *** * *** * ** * * *** consensus_4161#0 AGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAG 282 consensus_4161#1 AGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAG 356 consensus_4161#2 CTTCGGTGCCTCGGCAGGCTCACGGCAAA----ATTCCT--TTGGCAGCTAAGGGCGTAG 321 * ** * * ******* ***** ** * * * * ** consensus_4161#0 CGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTG 342 consensus_4161#1 CGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTG 416 consensus_4161#2 CACTTG-GATCGATGCAA-------GGTGCAGTCCGCCTAAGCTACTG--AAAACAATTC 371 * * * ** * * * * **** *** * *** ** * * * * * consensus_4161#0 GACCATCG--GGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAA 400 consensus_4161#1 GACCATCG--GGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAA 474 consensus_4161#2 TTCTGTTGTGGGTGTATGGAAGCAATAACCCTCTCCCTCCCCCACGGTGT-ACGTTAGTG 430 * * * **** * * ** * ** * * ** **** * ** consensus_4161#0 GCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGT 460 consensus_4161#1 GCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGT 534 consensus_4161#2 GTGTACTTCGA---AGGACAATGTAATGTTTGTGCATAGATCAATAATGAAACACATTCT 487 * *** * * ** * ** **** * ** * * * * consensus_4161#0 GATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGC 520 consensus_4161#1 GATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGC 594 consensus_4161#2 G--CGGGAGTGAGGCGAA------------------------------------------ 503 * * **** *** consensus_4161#0 ATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTAT 580 consensus_4161#1 A----------------------------------------------------------- 595 consensus_4161#2 ------------------------------------------------------------ consensus_4161#0 TCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCG 640 consensus_4161#1 ------------------------------------------------------------ consensus_4161#2 ------------------------------------------------------------ consensus_4161#0 TAGCACTGCAAGGTCGATGCAAGGTGCAGTCCCTCTAAGCTACTGAAAACAATTCTTCTG 700 consensus_4161#1 ------------------------------------------------------------ consensus_4161#2 ------------------------------------------------------------ consensus_4161#0 TTGTGGGT 708 consensus_4161#1 -------- consensus_4161#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||