cluster # 4163

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Anopheles gambiae
cluster # 4163 cluster # 4163 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4163#0 length = 748 sequences # 1

consensus_4163#1 length = 705 sequences # 1
consensus_4163#2 length = 691 sequences # 1

consensusID : consensus_4163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence

                              [CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAGAAGAAGTACAGTTCGGGACATTCTCACGGGTCAGGACATGTGCTTTTTTGCATATACAA]

[+] EMBL BM653866             [CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAGAAGAAGTACAGTTCGGGACATTCTCACGGGTCAGGACATGTGCTTTTTTGCATATACAA]




>consensus_4163#0
CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATC
TTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTC
TTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGA
TGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGG
GCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCG
GTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGAT
CGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGG
CTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGC
GATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCT
GGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCT
GGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGA
AGATCGGCTCAGTGTATCGTCACGGTGAGAAGAAGTACAGTTCGGGACATTCTCACGGGT
CAGGACATGTGCTTTTTTGCATATACAA

consensusID : consensus_4163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATCGAAGACACTGCCCTCTGCCCAAGCGCGTCCCGTAAAGCTGGAGGAGGCATTCCTAATGACTAAGTTTGGGCTGTACAATCTGTGTCTGATCGCCATTTCCGGCATCATCTTGGCTGCCGTGCTGCTCGAAACGCTTGGCATCAGTTACGTGCTGCCAGTGGCCGAGTGCGACCTGCTGCTGACCACCAGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCTGCTGCCGCTGATCGCCTGGTCCATCATTAACCAGGAGTGGGAGCTTGCCATCCCGCTGCTCGGCATCGTCTACCGGCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTGTGGCCGCCCTGGTACTGCTCGGACTGCCCGAGAGTCCGAAGTATC]

[+] EMBL BM607556             [CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATCGAAGACACTGCCCTCTGCCCAAGCGCGTCCCGTAAAGCTGGAGGAGGCATTCCTAATGACTAAGTTTGGGCTGTACAATCTGTGTCTGATCGCCATTTCCGGCATCATCTTGGCTGCCGTGCTGCTCGAAACGCTTGGCATCAGTTACGTGCTGCCAGTGGCCGAGTGCGACCTGCTGCTGACCACCAGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCTGCTGCCGCTGATCGCCTGGTCCATCATTAACCAGGAGTGGGAGCTTGCCATCCCGCTGCTCGGCATCGTCTACCGGCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTGTGGCCGCCCTGGTACTGCTCGGACTGCCCGAGAGTCCGAAGTATC]




>consensus_4163#1
CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATCGAAGACACTGCCCTCTGCCCA
AGCGCGTCCCGTAAAGCTGGAGGAGGCATTCCTAATGACTAAGTTTGGGCTGTACAATCT
GTGTCTGATCGCCATTTCCGGCATCATCTTGGCTGCCGTGCTGCTCGAAACGCTTGGCAT
CAGTTACGTGCTGCCAGTGGCCGAGTGCGACCTGCTGCTGACCACCAGGGAGAAGGGCGT
GCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGC
GGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATC
GGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGG
ATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAA
GCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCT
GCTGCCGCTGATCGCCTGGTCCATCATTAACCAGGAGTGGGAGCTTGCCATCCCGCTGCT
CGGCATCGTCTACCGGCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTG
TGGCCGCCCTGGTACTGCTCGGACTGCCCGAGAGTCCGAAGTATC

consensusID : consensus_4163#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGATACTGAACCGGATAGCCGAGCAGCAGGGCAAGGGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACGCCACCAGGTTCGACATCCAGGAGCTGGCGGGCCTGGGCGGCAATGGGACGGCACGGTCCGACCTGTGCCACCAGAAGCTGGACATTTCCGCCTACGAGCATTCGTTCGTGCTGGAAGCGATCTATGCGCTCGGGTTTGCCGTCATCGGGCTCATCATCAATGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAAAGAAGCACAGTTTGGGACATTCTCACGGTTAGGACATGT]

[+] EMBL BM577870             [CCGCCCACGCGTCCGCCCACGCGTCCGATACTGAACCGGATAGCCGAGCAGCAGGGCAAGGGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACGCCACCAGGTTCGACATCCAGGAGCTGGCGGGCCTGGGCGGCAATGGGACGGCACGGTCCGACCTGTGCCACCAGAAGCTGGACATTTCCGCCTACGAGCATTCGTTCGTGCTGGAAGCGATCTATGCGCTCGGGTTTGCCGTCATCGGGCTCATCATCAATGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAAAGAAGCACAGTTTGGGACATTCTCACGGTTAGGACATGT]




>consensus_4163#2
CCGCCCACGCGTCCGCCCACGCGTCCGATACTGAACCGGATAGCCGAGCAGCAGGGCAAG
GGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACGCCACCAGGTTCGACATCCAGGAG
CTGGCGGGCCTGGGCGGCAATGGGACGGCACGGTCCGACCTGTGCCACCAGAAGCTGGAC
ATTTCCGCCTACGAGCATTCGTTCGTGCTGGAAGCGATCTATGCGCTCGGGTTTGCCGTC
ATCGGGCTCATCATCAATGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTC
TGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTC
TATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGAC
CTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTC
GGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACG
TTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAAC
ATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAAAGAAGCAC
AGTTTGGGACATTCTCACGGTTAGGACATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4163#0      CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATC 60
consensus_4163#2      ---------------------CCGCCCACGCGTCCGCCCACG-CGTCCGATACT-GAACC 37
consensus_4163#1      ---------------------CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATC 39
                                             ***  * *** **         *         * * *

consensus_4163#0      TTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTC 120
consensus_4163#2      GGATAGCCGAGCAGCAGGGCAAGGGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACG 97
consensus_4163#1      GAAGACACTGCCCTCTGCCCAAGCGCGTCCCGTAAAGC----TGGAGGAGGCATTCCTAA 95
                             *   *    *   *   * * *  *          *        *  *     

consensus_4163#0      TTGCC---TTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCG 177
consensus_4163#2      CCACCAGGTTCGACATCCAGGAGCTGGCGGGCCTGGGCGGCAA--TGGGACGGCACGGTC 155
consensus_4163#1      TGACTAAGTTTGGGCTGTACAATCTGT---GTCTGATCGCCAT-TTCCGGCATCAT-CTT 150
                         *    ** *           **     * **   *  **   *  *           

consensus_4163#0      TGATGCGGTTCTTGACGGG--ATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTA 235
consensus_4163#2      CGAC-CTGTGCCACCAGAA--GCTGGACATTTCCG-----CCTACGAGCATTCGTTCGTG 207
consensus_4163#1      GGCTGCCGTGCTGCTCGAAACGCTTGGCATCAGTTACGT-GCTGCCAGTGGCCGAGTGCG 209
                       *   * ** *     *      *   ***           *  * *          *  

consensus_4163#0      CCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGT-CGTTTG 294
consensus_4163#2      C-TGGAAGCGATCTATG-CGCTCGGGTTTGCCGTCAT-------CGGGCTCAT-CATCAA 257
consensus_4163#1      ACCTGCTGCTGACCACCAGGGAGAAGGGCGTGCTGAGT-----GCCATCTCGTTCGCGGG 264
                          *  *      *              *                    * * *     

consensus_4163#0      TGTTCGGTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGT 354
consensus_4163#2      TGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGT 317
consensus_4163#1      CATCATTTG-CAGCTCGCATCTTTGGGGCTTTCTGGCG-GATACACGTGGCCGGCGG-GC 321
                                * ***  *   * *** * **  *  ** * *   **   ** **** * 

consensus_4163#0      GCTGATCGTGTTCAT-CGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCA 413
consensus_4163#2      GCTGATCGTGTTCAT-CGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCA 376
consensus_4163#1      AATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTAC-CA 380
                        * **  **   *  *  * *    *   ** *     ** *** ***   * * * **

consensus_4163#0      CGTGCGGCTTCTGCATCAGTGTGGTG-AACGCTTGCACCATTGACCTGTACCCAACGAAT 472
consensus_4163#2      CGTGCGGCTTCTGCATCAGTGTGGTG-AACGCTTGCACCATTGACCTGTACCCAACGAAT 435
consensus_4163#1      CCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCAT 440
                      *   *  **  *  ****  *** **     ****      *      *  **  *  **

consensus_4163#0      TTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTC--GGACGGCTCGGTAGCATCGTTG 530
consensus_4163#2      TTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTC--GGACGGCTCGGTAGCATCGTTG 493
consensus_4163#1      CCGC---CACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGC-TCCCGT 496
                         *   *  *  *     * * ** *  **  ***  **   ** *  * ** **    

consensus_4163#0      GCTCGAATCTGGTCGGC-TTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCC 589
consensus_4163#2      GCTCGAATCTGGTCGGC-TTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCC 552
consensus_4163#1      GCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCTGCTGCCGCTGATCGCC 556
                      **   ***  ** ** * *** ** ***       **     **   *     **** **

consensus_4163#0      -GGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACG 648
consensus_4163#2      -GGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACG 611
consensus_4163#1      TGGTCCATCATTAACCAGGAGTGG-GAGCTTGCCATCCCGCTGCTCGGCATCGTCTACCG 615
                       ****      *   * ** * ** * ***  ** **    * * *  ***   * * **

consensus_4163#0      GAAC--GTGTCGGAAGATCGGC--TCAGTGTATCGTCACGGTGAGAAGAAGTACAGTT-- 702
consensus_4163#2      GAAC--GTGTCGGAAGATCGGC--TCAGTGTATCGTCACGGTGA-AAGAAGCACAGTT-- 664
consensus_4163#1      GCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTGTGGCCGCCCTGGTAC 675
                      *  *  * * * *      **   *  * * *  * *  * *     *  *  * * *  

consensus_4163#0      ---CGGGACATTCTCACGGGTCAGGACATGTGCTTTTTTGCATATACAA 748
consensus_4163#2      ---TGGGACATTCTCACGG-TTAGGACATGT------------------ 691
consensus_4163#1      TGCTCGGACTGCCCGAGAGTCCGAAGTATC------------------- 705
                           ****   *  *  *        **