cluster # 4174

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Anopheles gambiae
cluster # 4174 cluster # 4174 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4174#0 length = 580 sequences # 2

consensus_4174#1 length = 566 sequences # 1

consensusID : consensus_4174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence

                              [CCGCGGACGCGTGGGCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGCTCTAGTAACCCTCCCCA]

[+] EMBL BM589572             [CCGCGGACGCGTGGGCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGCTCTAGTAACCCTCCCCA]
[+] EMBL BM630093             [             ccgGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGC                 ]




>consensus_4174#0
CCGCGGACGCGTGGGCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCT
CCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGA
GGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACA
CCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCA
TGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGA
AACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAA
CGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTT
AGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGA
AACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGG
AGAGTTTTATTTATTTAAGTAGCTCTAGTAACCCTCCCCA

consensusID : consensus_4174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAA]

[+] EMBL BM597093             [CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAA]




>consensus_4174#1
CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGT
GCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGT
CCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATC
GTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGA
GCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGC
TGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATAC
GCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGAT
TTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACAC
ACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGG
ACGAATTGATAGGTATCTCACAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4174#0      -----------------------------CCGCGGACGCG-TGGGCGCGAGTACTTGTGT 30
consensus_4174#1      CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGT 60
                                                    *  *  ****     ***************

consensus_4174#0      GCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGT 90
consensus_4174#1      GCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGT 120
                      ************************************************************

consensus_4174#0      CCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATC 150
consensus_4174#1      CCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATC 180
                      ************************************************************

consensus_4174#0      GTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGA 210
consensus_4174#1      GTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGA 240
                      ************************************************************

consensus_4174#0      GCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGC 270
consensus_4174#1      GCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGC 300
                      ************************************************************

consensus_4174#0      TGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATAC 330
consensus_4174#1      TGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATAC 360
                      ************************************************************

consensus_4174#0      GCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGAT 390
consensus_4174#1      GCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGAT 420
                      ************************************************************

consensus_4174#0      TTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACAC 450
consensus_4174#1      TTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACAC 480
                      ************************************************************

consensus_4174#0      ACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGG 510
consensus_4174#1      ACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGG 540
                      ************************************************************

consensus_4174#0      ACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGCTCTAGTA 570
consensus_4174#1      ACGAATTGATAGGTATCTCACAAGAA---------------------------------- 566
                      **************************                                  

consensus_4174#0      ACCCTCCCCA 580
consensus_4174#1      ----------