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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence
[ACCAATTTGCTAACACCATCGGTATGCGTTCTGGCCTTTGATAAAATACGCAACAAACAATCGCTCGGCTTATGTAAAGCTTGCAAACGATAAACCTTCCGTTCATCCGCTTTTCCCTTTGTTTGCAGCTCCACCCTGTTCGCGTGTGTGCTCCGTGTTGAGTAATCCATCCTCTCCATCCAATCTCGCACACCTGCCAATTTCTGGCTTGCTTGCCAATCAACACCACAGCGACTAGACACCAGGGAAAGTTTCGAGCGTTTCCAGACGTGAATGAAACGGCTGCTAGCGGTGCTTATCGATCATCGATTGTTGAAAAACTTTAGCCGTTGCTTCTATCGGGGCCTGCCGCAGAGCAAATATGTCCCGCCGGGCCACTGGCCGATAGCGAACAGTATGGACGGCAGCACTAATGGCAGTTCGGCAACGCCAACACGCAACAAGCAGCGGACGGCGCGCAACCTGCACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGTGGTAACAGCAGAAATGGTTCCTCTGCCACTGCCGGTCCCCGGGATCGGTTCGAGTTTACGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACGCCGCCCTGTACGGGGAGCACGATCCGGAANGGCTTCCGTGGGATCTGCGCTGCAAGCGGCTGCTGGCCGANATTAACACAATCAAGCCGGACATCCTGTGCGTGCAG]
[+] EMBL BX620673 [ACCAATTTGCTAACACCATCGGTATGCGTTCTGGCCTTTGATAAAATACGCAACAAACAATCGCTCGGCTTATGTAAAGCTTGCAAACGATAAACCTTCCGTTCATCCGCTTTTCCCTTTGTTTGCAGCTCCACCCTGTTCGCGTGTGTGCTCCGTGTTGAGTAATCCATCCTCTCCATCCAATCTCGCACACCTGCCAATTTCTGGCTTGCTTGCCAATCAACACCACAGCGACTAGACACCAGGGAAAGTTTCGAGCGTTTCCAGACGTGAATGAAACGGCTGCTAGCGGTGCTTATCGATCATCGATTGTTGAAAAACTTTAGCCGTTGCTTCTATCGGGGCCTGCCGCAGAGCAAATATGTCCCGCCGGGCCACTGGCCGATAGCGAACAGTATGGACGGCAGCACTAATGGCAGTTCGGCAACGCCAACACGCAACAAGCAGCGGACGGCGCGCAACCTGCACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGTGGTAACAGCAGAAATGGTTCCTCTGCCACTGCCGGTCCCCGGGATCGGTTCGAGTTTACGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACGCCGCCCTGTACGGGGAGCACGATCCGGAANGGCTTCCGTGGGATCTGCGCTGCAAGCGGCTGCTGGCCGANATTAACACAATCAAGCCGGACATCCTGTGCGTGCAG]
consensusID : consensus_4188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[CCGCCCACGCGTCCGCGAAAATATCTTTTATTTGCGTCCCGTTTGCTTACGCGTCGAGTGATAACAATTTAACCAATTTGCTAACACCATCGCTCCACCCTGTTCGCGTGTGTGCTCCGTGTTGAGTAATCCATCCTCTCCATCCAATCTCGCACACCTGCCAATTTCTGGCTTGCTTGCCAATCAACACCACAGCGACTAGACACCAGGGAAAGTTTCGAGCGTTTCCAGACGTGAATGAAACGGCTGCTAGCGGTGCTTATCGATCATCGATTGTTGAAAAACTTTAGCCGTTGCTTCTATCGGGGCCTGCCGCAGAGCAAATATGTCCCGCCGGGCCACTGGCCGATAGCGAACAGTATGGACGGCAGCACTAATGGCAGTTCGGCAACGCCAACACGCAACAAGCAGCGGACGGCGCGCAACCTGCACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGTGGTAACAGCAGAAATGGTTCCTCTGCCACTGCCGGTCCCCGGGATCGGTTCGAGTTTACGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACGCCGCCCTGTACGGGGAGCACGATCCGGAAGGGCTTCCGTGGGATCTGCGCTGCAAGCGGCTGC]
[+] EMBL BM583283 [CCGCCCACGCGTCCGCGAAAATATCTTTTATTTGCGTCCCGTTTGCTTACGCGTCGAGTGATAACAATTTAACCAATTTGCTAACACCATCGCTCCACCCTGTTCGCGTGTGTGCTCCGTGTTGAGTAATCCATCCTCTCCATCCAATCTCGCACACCTGCCAATTTCTGGCTTGCTTGCCAATCAACACCACAGCGACTAGACACCAGGGAAAGTTTCGAGCGTTTCCAGACGTGAATGAAACGGCTGCTAGCGGTGCTTATCGATCATCGATTGTTGAAAAACTTTAGCCGTTGCTTCTATCGGGGCCTGCCGCAGAGCAAATATGTCCCGCCGGGCCACTGGCCGATAGCGAACAGTATGGACGGCAGCACTAATGGCAGTTCGGCAACGCCAACACGCAACAAGCAGCGGACGGCGCGCAACCTGCACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGTGGTAACAGCAGAAATGGTTCCTCTGCCACTGCCGGTCCCCGGGATCGGTTCGAGTTTACGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACGCCGCCCTGTACGGGGAGCACGATCCGGAAGGGCTTCCGTGGGATCTGCGCTGCAAGCGGCTGC]
consensusID : consensus_4188#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[CCCCCCCGGAGGGTNTTTAGAGCAAATATTTTCCTGCCGGGGCCACTTGCTGATAGCTTGGGAAAAAAACCAAGTTATTGACGGCGAGCACTAATTGCAGTTCGGCAANGCCAACACGCAACAAGCAGCGGACGGNGCGCAACTGCACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGTGGTAACAGCAGAAATGTGTTCCTCTGCCACTGCCGGTCCCCGGGATCTGGTTCGAGTTTACGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACTGCCGCCCTGTACTGGGGAGCACGATCCGGAAGTGGCGTTCCTGTGGGATCTGCGCTGCAAGCGGCT]
[+] EMBL AL931637 [CCCCCCCGGAGGGTNTTTAGAGCAAATATTTTCCTGCCGGGGCCACTTGCTGATAGCTTGGGAAAAAAACCAAGTTATTGACGGCGAGCACTAATTGCAGTTCGGCAANGCCAACACGCAACAAGCAGCGGACGGNGCGCAACTGCACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGTGGTAACAGCAGAAATGTGTTCCTCTGCCACTGCCGGTCCCCGGGATCTGGTTCGAGTTTACGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACTGCCGCCCTGTACTGGGGAGCACGATCCGGAAGTGGCGTTCCTGTGGGATCTGCGCTGCAAGCGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4188#1 -------------------------CCGCCCACGCGTCCGCGAAAATAT----CTTTTAT 31
consensus_4188#2 ------------------------------------------------------------
consensus_4188#0 ACCAATTTGCTAACACCATCGGTATGCGTTCTGGCCTTTGATAAAATACGCAACAAACAA 60
consensus_4188#1 TTGCGTCCCGTTTGCTTACGCGTCGAGTGATAACAATTTAACCAATTTGCTAACACCATC 91
consensus_4188#2 ------------------------------------------------------------
consensus_4188#0 TCGCTCGGCTTATGTAAAGCTTGCAAACGATAAACCTTCCGTTCATCCGCTTTTCCCTTT 120
consensus_4188#1 G-------CTCCACCCTGTTCGCGTGTGTGCTCCGTGTTGAGTAATCCATCCTCTCCATC 144
consensus_4188#2 ------------------------------------------------------------
consensus_4188#0 GTTTGCAGCTCCACCCTGTTCGCGTGTGTGCTCCGTGTTGAGTAATCCATCCTCTCCATC 180
consensus_4188#1 CAATCTCGCACACCTGCCAATTTCTGGCTTGCTTGCCAATCAACACCACAGCGACTAGAC 204
consensus_4188#2 ------------------------------------------------------------
consensus_4188#0 CAATCTCGCACACCTGCCAATTTCTGGCTTGCTTGCCAATCAACACCACAGCGACTAGAC 240
consensus_4188#1 ACCAGGGAAAGTTTCGAGCGTTTCCAGACGTGAATGAAACGGCTGCTAGCGGTGCTTATC 264
consensus_4188#2 ------------------------------------------------------------
consensus_4188#0 ACCAGGGAAAGTTTCGAGCGTTTCCAGACGTGAATGAAACGGCTGCTAGCGGTGCTTATC 300
consensus_4188#1 GATCATCGATTGTTGAAAAACTTTAGCCGTTGCTTCTATCGGGGCCTGCCGCAGAGCAAA 324
consensus_4188#2 ---------------------------------CCCCCCCGGAGGGTNTT-TAGAGCAAA 26
consensus_4188#0 GATCATCGATTGTTGAAAAACTTTAGCCGTTGCTTCTATCGGGGCCTGCCGCAGAGCAAA 360
* *** * * ********
consensus_4188#1 TATGT-CCCGCCGGG-CCACTGGCCGATAGC----GAACAG--------TATGGACGGC- 369
consensus_4188#2 TATTTTCCTGCCGGGGCCACTTGCTGATAGCTTGGGAAAAAAACCAAGTTATTGACGGCG 86
consensus_4188#0 TATGT-CCCGCCGGG-CCACTGGCCGATAGC----GAACAG--------TATGGACGGC- 405
*** * ** ****** ***** ** ****** *** * *** ******
consensus_4188#1 AGCACTAATGGCAGTTCGGCAACGCCAACACGCAACAAGCAGCGGACGGCGCGCAACCTG 429
consensus_4188#2 AGCACTAATTGCAGTTCGGCAANGCCAACACGCAACAAGCAGCGGACGGNGCGCAAC-TG 145
consensus_4188#0 AGCACTAATGGCAGTTCGGCAACGCCAACACGCAACAAGCAGCGGACGGCGCGCAACCTG 465
********* ************ ************************** ******* **
consensus_4188#1 CACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGT 489
consensus_4188#2 CACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGT 205
consensus_4188#0 CACCAAAATGGCCAGTACAGCGTGCATCGACGGTGGGAAACGGTTGCCAGTGGTGGAGGT 525
************************************************************
consensus_4188#1 GGTAACAGCAGAAATG-GTTCCTCTGCCACTGCCGGTCCCCGGGATC-GGTTCGAGTTTA 547
consensus_4188#2 GGTAACAGCAGAAATGTGTTCCTCTGCCACTGCCGGTCCCCGGGATCTGGTTCGAGTTTA 265
consensus_4188#0 GGTAACAGCAGAAATG-GTTCCTCTGCCACTGCCGGTCCCCGGGATC-GGTTCGAGTTTA 583
**************** ****************************** ************
consensus_4188#1 CGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCAC-GCCGCCCTGTAC 606
consensus_4188#2 CGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCACTGCCGCCCTGTAC 325
consensus_4188#0 CGCTCATGAACTACAACATACTGGCGCAGGACCTGCTCGACTCGCAC-GCCGCCCTGTAC 642
*********************************************** ************
consensus_4188#1 -GGGGAGCACGATCCGGAAGG---GCTTCCGTGGGATCTGCGCTGCAAGCGGCTGC---- 658
consensus_4188#2 TGGGGAGCACGATCCGGAAGTGGCGTTCCTGTGGGATCTGCGCTGCAAGCGGCT------ 379
consensus_4188#0 -GGGGAGCACGATCCGGAANG---GCTTCCGTGGGATCTGCGCTGCAAGCGGCTGCTGGC 698
****************** * * * ************************
consensus_4188#1 ----------------------------------------
consensus_4188#2 ----------------------------------------
consensus_4188#0 CGANATTAACACAATCAAGCCGGACATCCTGTGCGTGCAG 738
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||