These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [GCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAAGTTGCTCTCTGTCGGGCCCGATCAGCGGCGGGCAGAGACGACCGGTCCGGACGGTGTGACGCGCGGCTCCTACTCCTATCTGGACGATAAGGGTGTGCAGCGAACGGTACAGTATATTGCCGGTGCCGGCATCGGTTACAAGGTGGTCCAGAGCACGGTCGGCGCAGGGACGCACCGGTTACAGCAGCCCAACTTTGGCATTAGCCACGTGGAGCAGAGTGAAATTGGTGACAATAACAATCCTTCCTATCAGACGGCTCCCTCGGGACCTGCCAGCGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGGTGGGTATGATGGTGGTTCGAATCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAACGGGACCATCGGGGGCTGGTAGTAGCTACCCGGACGGACCCAAGCCAGGAATTACCGGCTATCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGATGAGGAAGACTTTGACAGCAAGCGTCCTACAACGAGCTCTCCAAGCCTTCGTCCACCCACCACCGATCGACCGACGGGACCGAGTGACTCGAGCGAGACGTCCCGTGAAAAGTATCCTCCTTCCAGCGATC] [+] EMBL BX625153 [GCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAAGTTGCTCTCTGTCGGGCCCGATCAGCGGCGGGCAGAGACGACCGGTCCGGACGGTGTGACGCGCGGCTCCTACTCCTATCTGGACGATAAGGGTGTGCAGCGAACGGTACAGTATATTGCCGGTGCCGGCATCGGTTACAAGGTGGTCCAGAGCACGGTCGGCGCAGGGACGCACCGGTTACAGCAGCCCAACTTTGGCATTAGCCACGTGGAGCAGAGTGAAATTGGTGACAATAACAATCCTTCCTATCAGACGGCTCCCTCGGGACCTGCCAGCGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGGTGGGTATGATGGTGGTTCGAATCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAACGGGACCATCGGGGGCTGGTAGTAGCTACCCGGACGGACCCAAGCCAGGAATTACCGGCTATCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGATGAGGAAGACTTTGACAGCAAGCGTCCTACAACG ] [+] EMBL BX611085 [ CTATCAGACGGCTCCCTCGGGACCTGCCAGTGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGGTGGGTATGATGGTGGTTCGAGCCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAACGGGACCATCGGGGGCTGGCAGTAGCTACCCGGATGGGCCAAAGCCAGGAATTCCCGGCTATCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGACGAGGAAGACTTTGACAGCAAGCGTCCTACAACGAGCTCTCCAAGCCTTCGTCCACCCACCACCGATCGACCGACGGGACCGAGTGACTCGAGCGAGACGTCCCGTGAAAAGTATCCTCCTTCCAGCGATC] consensusID : consensus_4192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [AGAATCGCCACGAGGTNCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAACGTTGCTCTCTGTCGGGCCCGATCAGCGTGCTGGTGCAGAGACTGACCTGTGTCCTGGACTGGTGTGACTGCTGCTGTGCTCCTACATCCGTATCTGGACTGATAAGTGGTTGTTGCAAGCTGAACGTGTACATGTATATTTGCCTGGTGCCTGGCATTCNGAGTTACAATGGTGGTCCANGAAGCACTGGTCTGGCTGCAGTGGACTGCACCTGGTTACATGCAGCCCAACTTTTGGCACTTAGCCAACGTGGATGACAGATGTGAAACTTTGGTCTGACAATAAGCAATTCGCCTTTCCATAATCACATGAACTAGTGCTCCCCATCTNGGGGGAACCATTGCCCAAGCTGATACGCGTGCCCCCGTGTACANGTCCTGTGCTCGCTGTCGTGTGTACTGAATCCATTGTCNGCTCTGGTCCTGTCTCTTGCCTGAGTTGGGTGTATTTGAGTTGCGTTGGGTTCTGAAGTC] [+] EMBL AL931644 [AGAATCGCCACGAGGTNCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAACGTTGCTCTCTGTCGGGCCCGATCAGCGTGCTGGTGCAGAGACTGACCTGTGTCCTGGACTGGTGTGACTGCTGCTGTGCTCCTACATCCGTATCTGGACTGATAAGTGGTTGTTGCAAGCTGAACGTGTACATGTATATTTGCCTGGTGCCTGGCATTCNGAGTTACAATGGTGGTCCANGAAGCACTGGTCTGGCTGCAGTGGACTGCACCTGGTTACATGCAGCCCAACTTTTGGCACTTAGCCAACGTGGATGACAGATGTGAAACTTTGGTCTGACAATAAGCAATTCGCCTTTCCATAATCACATGAACTAGTGCTCCCCATCTNGGGGGAACCATTGCCCAAGCTGATACGCGTGCCCCCGTGTACANGTCCTGTGCTCGCTGTCGTGTGTACTGAATCCATTGTCNGCTCTGGTCCTGTCTCTTGCCTGAGTTGGGTGTATTTGAGTTGCGTTGGGTTCTGAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4192#0 ----------------GCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCG 44 consensus_4192#1 AGAATCGCCACGAGGTNCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCG 60 ******************************************* consensus_4192#0 TTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAA-GTTGCTCTCTGTCGGGCCCGATCA 103 consensus_4192#1 TTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAACGTTGCTCTCTGTCGGGCCCGATCA 120 *********************************** ************************ consensus_4192#0 GCG-GCGGG--CAGAGAC-GACCGGT---CCGGAC-GGTGTGAC----GCGCGGCTCCTA 151 consensus_4192#1 GCGTGCTGGTGCAGAGACTGACCTGTGTCCTGGACTGGTGTGACTGCTGCTGTGCTCCTA 180 *** ** ** ******* **** ** * **** ******** ** ******* consensus_4192#0 CTCC--TATCTGGAC-GATAAGGGTGTGCAGC-----GAACG-GTACA-GTATATTG--C 199 consensus_4192#1 CATCCGTATCTGGACTGATAAGTGGTTGTTGCAAGCTGAACGTGTACATGTATATTTGCC 240 * * ********* ****** * ** ** ***** ***** ******* * consensus_4192#0 CGGTGCC-GGCATC---GGTTACAA-GGTGGTCCAG--AGCAC-GGTCGG--CGCAG-GG 248 consensus_4192#1 TGGTGCCTGGCATTCNGAGTTACAATGGTGGTCCANGAAGCACTGGTCTGGCTGCAGTGG 300 ****** ***** ******* ********* ***** **** * **** ** consensus_4192#0 AC-GCACC-GGTTACA-GCAGCCCAACTTT-GGCA-TTAGCCA-CGTGGA--GCAGA-GT 299 consensus_4192#1 ACTGCACCTGGTTACATGCAGCCCAACTTTTGGCACTTAGCCAACGTGGATGACAGATGT 360 ** ***** ******* ************* **** ******* ****** **** ** consensus_4192#0 GAAA--TTGGT--GACAATAA-CAATCCTTCCTATCAGA--CGGCTCCCTCGGGACCTGC 352 consensus_4192#1 GAAACTTTGGTCTGACAATAAGCAATTCGCCTTTCCATAATCACATGAACTAGTGCTCCC 420 **** ***** ******** **** * * * ** * * * * * * consensus_4192#0 CAGCGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGG 412 consensus_4192#1 CATCTNGGGGGAACCATTGCCCAAGCTGATACGCGTGCCC-CCGTGTACANGTCCTGTGC 479 ** * * ** * ** * ** * ** **** * consensus_4192#0 TGGGTATGATGGTGGTTCGAATCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAAC 472 consensus_4192#1 TCGCTGTCGTG-TGTACTGAATCCATTGTCNGCTCTGGTCCTGTCTCTTG--CCTGAGTT 536 * * * * ** ** ***** * * **** * ** * *** consensus_4192#0 GGGACCATCGGGGGCTGGTAGTAGCTACCCGGACGGACCCAAGCCAGGAATTACCGGCTA 532 consensus_4192#1 GGGTGTATTTGAG--TTGCGTTGGGTTCTGAAGTC------------------------- 569 *** ** * * * * * * * * consensus_4192#0 TCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGATGAGGAAGACTTTGACAGCAAGCG 592 consensus_4192#1 ------------------------------------------------------------ consensus_4192#0 TCCTACAACGAGCTCTCCAAGCCTTCGTCCACCCACCACCGATCGACCGACGGGACCGAG 652 consensus_4192#1 ------------------------------------------------------------ consensus_4192#0 TGACTCGAGCGAGACGTCCCGTGAAAAGTATCCTCCTTCCAGCGATC 699 consensus_4192#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||