cluster # 4193

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Anopheles gambiae
cluster # 4193 cluster # 4193 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4193#0 length = 848 sequences # 2

consensus_4193#1 length = 303 sequences # 1

consensusID : consensus_4193#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 848
fasta sequence

                              [GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGG-GGAAAAGC-AGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCA-GCGGATGCTTTGCAG-GAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGAAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACTGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAAGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGGATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAACCGTACGC]

[+] EMBL BX609158             [GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGG GGAAAAGC AGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCA GCGGATGCTTTGCAG GAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGAAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACTGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAAGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGGATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAACCGTACGC]
[+] EMBL BM652091             [   ccgAAACAATCACACCCAAGGCTTACTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGGTGGAAAAGCAAGAGCCAGTACAGCAGCTTCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGATGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCTATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCCGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTGGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCATAGTCGTACGGCTAAAGAGTTTATCGACGAGCTGACGGCAACCAC GCAGGCGGATGCTTTG AGCGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTCAGTGATAACCACGAAAACAAGGGTGTCGATTTGTACGTGCTCGAGCGAGCGATTCTAAGCGCTCAC                                                                                                                                                                                                    ]




>consensus_4193#0
GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATG
GCAGTAGCGGGGAAAAGCAGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAA
ACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAA
ATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAA
AGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTT
AGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTAT
CGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCA
GCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGG
TGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGT
CTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGA
AAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACT
GCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAA
GGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGG
ATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAA
CCGTACGC

consensusID : consensus_4193#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT]

[+] EMBL AL931652             [CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT]




>consensus_4193#1
CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCG
GCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACC
CCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGT
AGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTG
CAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTG
CAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4193#0      GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATG 60
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      GCAGTAGCGGGGAAAAGCAGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAA 120
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      ACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGA-ACGCTTCGAGAAGA 179
consensus_4193#1      ------------------------------------CCCGAGGTNTACGCTTCGAGAAGA 24
                                                             ** *   **************

consensus_4193#0      AATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGA 239
consensus_4193#1      AATAC-GCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAA-GCGGAACAGA 82
                      ***** ******************************************* **********

consensus_4193#0      AAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATT 299
consensus_4193#1      AAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATT 142
                      ************************************************************

consensus_4193#0      TAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTA 359
consensus_4193#1      TAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTA 202
                      ************************************************************

consensus_4193#0      TCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGC 419
consensus_4193#1      TCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGC 262
                      ************************************************************

consensus_4193#0      AGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACG 479
consensus_4193#1      AGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT------------------- 303
                      *****************************************                   

consensus_4193#0      GTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCG 539
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      TCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACG 599
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      AAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAAC 659
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      TGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCA 719
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      AGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGG 779
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      GATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAA 839
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      ACCGTACGC 848
consensus_4193#1      ---------