These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGTTTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCGGTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAGACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGTTGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG] [+] EMBL BM655497 [CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGTTTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCGGTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAGACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGTTGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCC ] [+] EMBL BM630458 [ ccgGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGTTTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCGGTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAGACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGTTGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG] consensusID : consensus_4194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCAGGCGTGCAAAAGTGAAGCAAAACAGACACACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGGCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAACGACCAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCATCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTTCTGTTCGGGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTGGTTCCGCGCAACGATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACGAAGGAAATCGAATCCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTGCATACGGGCGTCTCGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTACACCAGCAGGAAACGGAACAGT] [+] EMBL BM577905 [CCGCAGGCGTGCAAAAGTGAAGCAAAACAGACACACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGGCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAACGACCAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCATCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTTCTGTTCGGGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTGGTTCCGCGCAACGATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACGAAGGAAATCGAATCCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTGCATACGGGCGTCTCGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTACACCAGCAGGAAACGGAACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4194#0 CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACAC 60 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 CGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCA 120 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 GATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGT 180 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 TTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCG 240 consensus_4194#1 -------------------------------------------------------CCGCA 5 *** consensus_4194#0 GTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAG 300 consensus_4194#1 G--GCGTGCAA--AAGTGAAGCAAAACAG---ACACACACACACACACAC-ACCGGCGGC 57 * * *** * ** ** * ** ** * * ** * *** * consensus_4194#0 ACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGT 360 consensus_4194#1 GCAG--TGTCGATTAACAACAGGTGTGTGGCAAACGAAACAG--CAATCCAGCTGCAGAT 113 ** * * ** * *** * * * * * ** * * * * * consensus_4194#0 TGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTG 420 consensus_4194#1 CGAGAGCAA--CGAC-CAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTG 170 ** * ** **** ** ***************************************** consensus_4194#0 CGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAG 480 consensus_4194#1 CGGAAACAAGCGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAG 230 ****************** **************** ************************ consensus_4194#0 CAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCG 540 consensus_4194#1 CAGTCCTCATCCTCCTCCTCCTCC---TTCCTCTTCTCTTGCATCAGCACCACCGTCGCG 287 ******** *************** ********************************* consensus_4194#0 CTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGAT 600 consensus_4194#1 CTGGTTCTGTTCGGGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGAT 347 ***** ***************** ************************************ consensus_4194#0 AGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTC 660 consensus_4194#1 AGTGCCAGCAGCCTGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTC 407 ******************************** ******** ******** ********* consensus_4194#0 GGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG------------- 707 consensus_4194#1 GGCAGCCGGTACGGGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTG 467 ******************************** ** ** ******** consensus_4194#0 ------------------------------------------------------------ consensus_4194#1 GTTCCGCGCAACGATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACG 527 consensus_4194#0 ------------------------------------------------------------ consensus_4194#1 AAGGAAATCGAATCCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTG 587 consensus_4194#0 ------------------------------------------------------------ consensus_4194#1 CATACGGGCGTCTCGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTA 647 consensus_4194#0 ---------------------- consensus_4194#1 CACCAGCAGGAAACGGAACAGT 669 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||