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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1071 fasta sequence
[CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTGTACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA]
[+] EMBL BM657081 [CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTGTACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCC ]
[-] EMBL CNS09NZM [ CCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCC CCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA]
consensusID : consensus_4199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGCCCCCCCTGGCCCCCCGGGAA]
[+] EMBL CNS09NZL [TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGCCCCCCCTGGCCCCCCGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4199#0 ---------------CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGT 45
consensus_4199#1 TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCC-TTGTTCTTGTCCTACTTGT 59
* * ****************** *******************
consensus_4199#0 CGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTC 105
consensus_4199#1 CGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTC 119
********************************* **************************
consensus_4199#0 GAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCA 165
consensus_4199#1 GAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCG-----GTGCCTGTGTGCA 174
************************** **** ********** *************
consensus_4199#0 TATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTAC 225
consensus_4199#1 TATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTAC 234
************************************************************
consensus_4199#0 AGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTG 285
consensus_4199#1 AGTGCATATGGGCGGATGCC-GTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTG 293
***************** ** ***************************************
consensus_4199#0 TCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAA 345
consensus_4199#1 TCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAA 353
************************************************************
consensus_4199#0 CGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGT 405
consensus_4199#1 CGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGT 413
************************************************************
consensus_4199#0 TGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAG 465
consensus_4199#1 TGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAG 473
*************************************************** ********
consensus_4199#0 TAAGCCCCCCCCCTG-TACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTA 524
consensus_4199#1 TAAGCGCCCCCCCTGGCCCCCCGGGAA--------------------------------- 500
***** ********* * * ****
consensus_4199#0 CAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCG 584
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 TTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCA 644
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 CCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCG 704
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 ACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCT 764
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 GCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAAT 824
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 GGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGA 884
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 GTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGAT 944
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 AAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCAC 1004
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 CACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCG 1064
consensus_4199#1 ------------------------------------------------------------
consensus_4199#0 AAAAAAA 1071
consensus_4199#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||