These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATACATACATAAACATAAACACAAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGGGGTACCACATGAGTCCCTTCAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAAATCTGTCNTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACNAGCCCCGGGTTTGCAAAGAATGTTTAGAACGGAGANGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGGGCAACAGTACGTCTGGGTCGTCAGCTCGTTGANGCCTCCTTAGATGGGTAAAATGATCTTTTGTACAT] [+] EMBL BX625375 [TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATACATACATAAACATAAACACAAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGGGGTACCACATGAGTCCCTTCAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAAATCTGTCNTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACNAGCCCCGGGTTTGCAAAGAATGTTTAGAACGGAGANGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGGGCAACAGTACGTCTGGGTCGTCAGCTCGTTGANGCCTCCTTAGATGGGTAAAATGATCTTTTGTACAT] consensusID : consensus_4203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGCGTTCTATTTCGATCGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGAGTTGTTTAACGTTGTAGATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTTGTTATAGTTTTGTGCGTATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCTGCTCTAAGCCCCCCCCTCCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATATACATACATAAACATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTTATCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCCTCCAAGTGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAA] [+] EMBL BM649203 [CCGCGTTCTATTTCGATCGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGAGTTGTTTAACGTTGTAGATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTTGTTATAGTTTTGTGCGTATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCTGCTCTAAGCCCCCCCCTCCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATATACATACATAAACATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTTATCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCCTCCAAGTGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAA] consensusID : consensus_4203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [AGATCGCCCGAGGTAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGTGGTACCACATGAGTCCCTTGAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCTATGAAGATGGACAAAATCTGTCGTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACAAGCCCCGGGTTTGCAAAGAAATGTTTAGAACGGAGAGGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGTGCAACAGTACGTCTGGTTCGTCAGCTCGTTGAGGCCTCCTTAGATGGTTAAATGATCTTTTGTACATGTTTCGTAGTTGCTTAAGTCACTCCCTTTTCCCTTTTTCACTTTTGGCTCATTTACTGCCCCTATTTTGGAGAGTTCTATGTT] [+] EMBL AL930297 [AGATCGCCCGAGGTAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGTGGTACCACATGAGTCCCTTGAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCTATGAAGATGGACAAAATCTGTCGTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACAAGCCCCGGGTTTGCAAAGAAATGTTTAGAACGGAGAGGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGTGCAACAGTACGTCTGGTTCGTCAGCTCGTTGAGGCCTCCTTAGATGGTTAAATGATCTTTTGTACATGTTTCGTAGTTGCTTAAGTCACTCCCTTTTCCCTTTTTCACTTTTGGCTCATTTACTGCCCCTATTTTGGAGAGTTCTATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4203#0 TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGT 60 consensus_4203#2 ------------------------------------------------------------ consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 TTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACG 120 consensus_4203#2 ------------------------------------------------------------ consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 GATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCG 180 consensus_4203#2 ------------------------------------------------------------ consensus_4203#1 -------------------------------------------CCGCGTTCTATTTCGAT 17 consensus_4203#0 CTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATA 240 consensus_4203#2 ------------------------------------------------------------ consensus_4203#1 CGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGAGTTGTTTAACGTTGTAG 77 consensus_4203#0 TATACATACATAAACATAAACACAAA---CGCATATAGATACGGTTTTGGTGTGCTGC-- 295 consensus_4203#2 ----------AGATCGCCCGAGGTAA---CGCATATAGATACGGTTTTGGTGTGCTGC-- 45 consensus_4203#1 ATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTTGTTATAGTTTTGTGCGT 137 ** ** ** * *** * ** * *** consensus_4203#0 ---TTACCTGCTATTGTGGAACT-ATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTA 351 consensus_4203#2 ---TTACCTGCTATTGTGGAACT-ATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTA 101 consensus_4203#1 ATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCTGCTCTAAGCCCCCCCCT 197 ***** *** * * ** *** ** ** ** * * * * * * consensus_4203#0 CCAGACGG---ACCATTCTGAGCGTTTAGCAAG-----TAGAAACTACTCACCTCTGCAA 403 consensus_4203#2 CCAGACGG---ACCATTCTGAGCGTTTAGCAAG-----TAGAAACTACTCACCTCTGCAA 153 consensus_4203#1 CCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCT 257 ******* ** * ** * *** ** * * * ** * consensus_4203#0 TCAAGCAAAGCAGAACGTCGCTGTTGGGGTA-CCACATGAGTCCCT-TCAAGTGGACATG 461 consensus_4203#2 TCAAGCAAAGCAGAACGTCGCTGTTGTGGTA-CCACATGAGTCCCT-TGAAGTGGACATG 211 consensus_4203#1 TTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACGGATATTATATGTGTCTA 317 * ** * ** * * * ** * *** * * * ** * consensus_4203#0 AGTGGTGTACAAATTATTGGTGGCCTATGAAG-ATGGACAAAATCTGTCNTACTTAGTTT 520 consensus_4203#2 AGTGGTGTACAAATTATTGGTGGC-TATGAAG-ATGGACAAAATCTGTCGTACTTAGTTT 269 consensus_4203#1 TGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCGCTTG-CGTGCGCGTATT 376 ** * * ** ** * ** * **** ** * * * ** consensus_4203#0 TTAGCTGTTTAGATTGAATAGAGAGA-AACNAGCCCCGGGTTTGCAAAGAA-TGTTTAGA 578 consensus_4203#2 TTAGCTGTTTAGATTGAATAGAGAGA-AACAAGCCCCGGGTTTGCAAAGAAATGTTTAGA 328 consensus_4203#1 GCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATATACATACATAAA 436 *** ***** ** ** * * ** * * * * * * ** * consensus_4203#0 -----ACGGAGANGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGG-GGCAACAGTACGT 632 consensus_4203#2 -----ACGGAGAGGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGG-TGCAACAGTACGT 382 consensus_4203#1 CATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTTATCTGCTATTGTGGAA 496 ** * * * * * ** * *** * * * * * ** * ** consensus_4203#0 CTGGGT--CGTCAGCTCGTTGANGCCTCCTTAGATGGGTAAAATGATCTTTTGTACAT-- 688 consensus_4203#2 CTGGTT--CGTCAGCTCGTTGAGGCCTCCTTAGATGGTTAAA-TGATCTTTTGTACATGT 439 consensus_4203#1 CTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGA-CGGACCATTCTGAGCGT 555 ** * ** * * ** ** * * * * ** * consensus_4203#0 ------------------------------------------------------------ consensus_4203#2 TTCGTAGTTGCTTA--AGTCACTCCCTTTTCCCTTTTTCACTTTTGGCTCATTTACTGCC 497 consensus_4203#1 TTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCCTCCAAGTGTGGTGTA 615 consensus_4203#0 --------------------------------- consensus_4203#2 CCTATTTTGGAGAGTTCTATGTT---------- 520 consensus_4203#1 CAAATTATTG-GTGGCCTATGAAGATGGACAAA 647 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||