cluster # 4204

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Anopheles gambiae
cluster # 4204 cluster # 4204 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4204#0 length = 707 sequences # 2

consensus_4204#1 length = 640 sequences # 1

consensusID : consensus_4204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCGATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAGGGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACATTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCTGTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATAATGTGTAAGAAAATT----CAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTATCGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACCCGTTTTCTTAGGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCACCGTCGTATTTCTTTTTCATTG]

[+] EMBL BM580598             [CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCGATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAGGGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACATTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCTGTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATAATGTGTAAGAAAATT    CAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTATCGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACCCGTTTTCTTAGGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCACCGTCGTATTTCTTTTTCATTG]
[+] EMBL BX609755             [                                            CCCATCCAACCAACCGATTGCAGTTTTTAGAGACGACTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAGGGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACATTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCTGTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATAATGTGTAAGAAAATTCAAACAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTATCGTTCCCGTGGCGCTGAATGCGGTTGCCCGTTGTGCGAATATTGTACACCCGTTTTCTTACGAATGTAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATTAACAA                                                                                                                                                                         ]




>consensus_4204#0
CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCG
ATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAG
GGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACA
TTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCT
GTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATA
ATGTGTAAGAAAATTCAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTAT
CGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACCCGTTTTCTTA
GGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCA
GGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAAAC
CTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACG
AGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATA
TGTTGTACTTTCCAATCGTTTTCCACCGTCGTATTTCTTTTTCATTG

consensusID : consensus_4204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGCCCACGCGTCCGGTTGTGCGAATATTGTACACCCGTTTTCTTAGGAATGTAACCGAATTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGTGGATGAGGTGTAAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCGACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAAAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCGCCGTCGTGTAAGCGTTGCACTACTTTTATTTCTTTTTCATTGATTATCGAACCGCTTCGTTTTCATAAGTCTACAGTTGGAGGAGTGAAATTAAATTTGTCTTTTATTCAATTCAAAACAGGGTAGACTCAAAGCCAAACGCCAACATATACAATGCACCCAAACATACACACTTTTACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACTGTTACTTAAATTGTATTGTCACGATATCATCGTCGTCAATCGTGTTTGTGTGTGTGCATGTGTTGGTTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT]

[+] EMBL BM656019             [CCGCCCACGCGTCCGGTTGTGCGAATATTGTACACCCGTTTTCTTAGGAATGTAACCGAATTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGTGGATGAGGTGTAAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCGACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAAAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCGCCGTCGTGTAAGCGTTGCACTACTTTTATTTCTTTTTCATTGATTATCGAACCGCTTCGTTTTCATAAGTCTACAGTTGGAGGAGTGAAATTAAATTTGTCTTTTATTCAATTCAAAACAGGGTAGACTCAAAGCCAAACGCCAACATATACAATGCACCCAAACATACACACTTTTACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACTGTTACTTAAATTGTATTGTCACGATATCATCGTCGTCAATCGTGTTTGTGTGTGTGCATGTGTTGGTTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT]




>consensus_4204#1
CCGCCCACGCGTCCGGTTGTGCGAATATTGTACACCCGTTTTCTTAGGAATGTAACCGAA
TTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGTGGATGAGGTGT
AAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGC
GACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGC
GATCGAAAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAA
TCGTTTTCCGCCGTCGTGTAAGCGTTGCACTACTTTTATTTCTTTTTCATTGATTATCGA
ACCGCTTCGTTTTCATAAGTCTACAGTTGGAGGAGTGAAATTAAATTTGTCTTTTATTCA
ATTCAAAACAGGGTAGACTCAAAGCCAAACGCCAACATATACAATGCACCCAAACATACA
CACTTTTACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACT
GTTACTTAAATTGTATTGTCACGATATCATCGTCGTCAATCGTGTTTGTGTGTGTGCATG
TGTTGGTTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4204#0      CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCG 60
consensus_4204#1      ----------------CCGCCCACGC-GTCCGGTTG-TGCGAATATTGTACACCCGTTTT 42
                                      ** **  *   * *** *** * *** *    * ** ** *   

consensus_4204#0      ATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAG 120
consensus_4204#1      CTTAGGAATGTAACCGAATTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGAT 102
                       **     **  *  **    **   * **    * *     *  * *   * **** * 

consensus_4204#0      GGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACA 180
consensus_4204#1      TGCAGGTGGATGAGGTGTAAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACA 162
                       *****  * *    *     *** * * **    **  *   **     * **   ***

consensus_4204#0      TTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCT 240
consensus_4204#1      A-----ACCTAGTAGCAAG-AGGCGACA-ACCT----------AGAGACTGATCTT-TGT 204
                             ***  ** *  * *******  ****           ** ** ** *     *

consensus_4204#0      GTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATA 300
consensus_4204#1      ACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAAAGCGA---TCCGTGGTA 261
                          **   ***  **  *  * *  ** * * ** *   * * ** *   *  *   **

consensus_4204#0      ATGTGTAAGAAAATTCAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTAT 360
consensus_4204#1      ATGCGCTCGAACG---AACCCGGCATATGTTGTACTTTCCAATCGTTTTCCGCC--GTCG 316
                      *** *   ***     ** **  *  *       ** * ****   * **   *  **  

consensus_4204#0      CGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACC--CGTTTTCT 418
consensus_4204#1      TGTAAGCGTTGCACT-ACTTTTATTTCTTTTTCATTGATTATCGAACCGCTTCGTTTTCA 375
                       **   ***  * ** * *    ** *   **    ****** * **  *  ******* 

consensus_4204#0      TAGGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTG 478
consensus_4204#1      TAAGTCTACAGTTGGAGG--AGTGAAATTAAATTTGTCTTT---------TATTCAATT- 423
                      ** *  ** *   * *    *  * *****  **  ** *           *  * *** 

consensus_4204#0      CAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAA 538
consensus_4204#1      CAAAACAGGGTAGACTCAAAGCCA--AACGCCAACATATACAATGCACCCAAACATACAC 481
                      **       *  *  * * ****   *  *  *        *    *** * *   *** 

consensus_4204#0      ACCTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTT-GTACGTTTTAGAACTAGTCC 597
consensus_4204#1      ACTTT-TACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACT 540
                      ** *  **   *    *   *    **   **    ***   * ***  * *  **  * 

consensus_4204#0      ACGAGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAAT-GCGCTCGAACGAACCCGG 656
consensus_4204#1      GTTACTTAAATTGTATTGTCACGATATC-ATCGTCGTCAATCGTGTTTGTGTGTGT---G 596
                         * *    * *  *     *** * * ***   *  *** * * * *   *      *

consensus_4204#0      CATATGTTGTACTTTCCAATCGTTTTCC-ACCGTCGTATTTCTTTTTCATTG 707
consensus_4204#1      CATGTGTTGG----TTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT---- 640
                      *** *****     *  *** ****    *  *  *  * * ** **