These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [AGAATCGGCACGAGGCNNTACGGGCTGGAGCTGCTGCGCACCTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGAGTCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGGCCGAAGGATTTCCAGTCATGATTGAAGACGGAGCTCGTAGTCCTACCAAAGACCTGCTGTACCCGAATACGTCATGACGCAGGGGTATATAGCTCGGGACCTGATTACGGTGCGTTGTAACGCGAGCANAAGTGCACNGCCAAGGAACNGAATTCGAANAATCTTACCGNNCAANCGGAATATTACAGTACTAGCCACTGNACAAACAGACTTGATTGCAACACATTCTTGACNNTCAGGGCCTTTGGCATCCGGACCGANTTNCCGAAGTTCGGGCGCAAGTACCTTAAGGGTAGCCCCAGTTANTNTTNATTCCAAAGGGGCAGCANCCGGNAGAGNCAAGGGTAGTTCAAGCGGCATAAGGCCAAAATTCCGGAAAAACGGNTTATTGGANNACNCCNGGACNTATNCCAGGGGGAGGG] [+] EMBL BX468586 [AGAATCGGCACGAGGCNNTACGGGCTGGAGCTGCTGCGCACCTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGAGTCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGGCCGAAGGATTTCCAGTCATGATTGAAGACGGAGCTCGTAGTCCTACCAAAGACCTGCTGTACCCGAATACGTCATGACGCAGGGGTATATAGCTCGGGACCTGATTACGGTGCGTTGTAACGCGAGCANAAGTGCACNGCCAAGGAACNGAATTCGAANAATCTTACCGNNCAANCGGAATATTACAGTACTAGCCACTGNACAAACAGACTTGATTGCAACACATTCTTGACNNTCAGGGCCTTTGGCATCCGGACCGANTTNCCGAAGTTCGGGCGCAAGTACCTTAAGGGTAGCCCCAGTTANTNTTNATTCCAAAGGGGCAGCANCCGGNAGAGNCAAGGGTAGTTCAAGCGGCATAAGGCCAAAATTCCGGAAAAACGGNTTATTGGANNACNCCNGGACNTATNCCAGGGGGAGGG] consensusID : consensus_4206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [TGCAACACGCATCGACCGTTTCGTTACGCTCGAGCCTTTCCGATTCGCGGCTCTCGCTACATAATGGGGCGCAAGGCGCCTCGCCGGGCGGACCGTCGCCCCCGATCGCACCGGACGCCATATCGGTGCAAAGCTTCTCGTCCGTCGCGTCCCGTGGCGAGGAGGATGAGTTTATGCTCAACCCCTCGGGGTACGGTGGACGCGCGCGCAACTCGTCCCCGTTTCGTGATCTCGACTTCATTCCCAACTTCTGCATTGCGGCGGTGGATCGGGACGGGCTGGAGCTGCTGCGCAACTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGCTCGTGTCCTACCAAAGCCTGCTGTACCCAATACTCATGACGCAAGGTATATACTCGGCCCTGTTCGTGCTGTACGCGAGCAAG] [+] EMBL BX608899 [TGCAACACGCATCGACCGTTTCGTTACGCTCGAGCCTTTCCGATTCGCGGCTCTCGCTACATAATGGGGCGCAAGGCGCCTCGCCGGGCGGACCGTCGCCCCCGATCGCACCGGACGCCATATCGGTGCAAAGCTTCTCGTCCGTCGCGTCCCGTGGCGAGGAGGATGAGTTTATGCTCAACCCCTCGGGGTACGGTGGACGCGCGCGCAACTCGTCCCCGTTTCGTGATCTCGACTTCATTCCCAACTTCTGCATTGCGGCGGTGGATCGGGACGGGCTGGAGCTGCTGCGCAACTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGCTCGTGTCCTACCAAAGCCTGCTGTACCCAATACTCATGACGCAAGGTATATACTCGGCC ] [+] EMBL BX615292 [ TGCTGCGCAACTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGCTCGTGTCCTACCAAAGCCTGCTGTACCCAATACTCATGACGCAGGGTATATACTCGGCCCTGTTCGTGCTGTACGCGAGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4206#0 AGAATCGGCACGAGGCNNTACGGGCTGGAGCTGCTGCGCACCTACCTCACCGATGCGTTC 60 consensus_4206#1 ----------------------------TGCAAC-ACGCATCGACCGTTTCGTTACGCTC 31 ** * **** * *** ** * ** ** consensus_4206#0 CAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCC 120 consensus_4206#1 GA--GCCTTTCCGATTCGCGGCTCTCGCTACATAATGGGGCG-CAAGGCGCCTC-GCCGG 87 * ** ** * ** *** ** * *** * * * * * * ** * consensus_4206#0 ACGTACAGCTGCTGGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGA 180 consensus_4206#1 GCGGACCGTCGCCCCCGATCGCACCGGACGCCATATCG-GTGCAAAGCTTC--TCGTCCG 144 ** ** * ** * *** * * *** **** * * * * * consensus_4206#0 GTGGATCTCGAGTCGTGA--GCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGC 238 consensus_4206#1 TCGCGTCCCGTGGCGAGGAGGATGAGTTTATGCTCAACCCCTCGGGGT-ACGGTGGACGC 203 * ** ** * ** * * * * ** * * ** *** * * * *** consensus_4206#0 CCTGGCCGAAGGATTTCCAGTCATGATTGAAGACGGAGCTCGTAGTCCTACCAAAGACCT 298 consensus_4206#1 GCGCGCAACTCGTCCCCGTTTCGTGAT-----------CTCGACTTCATTCCCAACTTCT 252 * ** * * ** **** **** ** * ** ** ** consensus_4206#0 GCTGTACCCGAATACGTCATGACGCAGGGGTATATAGCTCGGGACCTGATTAC-GGTGCG 357 consensus_4206#1 GCATTGCGGCGGTGGATCGGGACG-GGCTGGAGCTGCTGCGCAACTACCTCACCGATGCG 311 ** * * * ** **** * * * * ** ** * ** * **** consensus_4206#0 TTGTAACGCGAGCANAAGTGCACNGCCAAGGAACNGAATTCGAANAATCTTACCGNNCAA 417 consensus_4206#1 TTCCAGTGCGCTTACCA-TCCGCTGC--ACGGGCTG--TTCGAGAAGC--TGTCGAACTG 364 ** * *** * * * * * ** * * * * ***** * * ** * consensus_4206#0 NCGGAATATTACAGTACTAGCCACTGNACAAACAGACTTGATTGCAACACATTCTTGACN 477 consensus_4206#1 TTTCTACTCCAC-GTAC-AGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCG 422 * ** **** *** *** * *** * * * * * * * * * consensus_4206#0 NTCAGGGCCTTTGGCATCCGGACCGANTTNCCGAAGTTCGGGCGCAAGT--ACCTTAAGG 535 consensus_4206#1 GCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATG 482 ** * * * *** ** ** * ** * * ** * ** * * * consensus_4206#0 GTAGCCCCAGTTANTNTTNATTCCAAAGGGGCAGCANCCGGNAGAGNCAAGGGTAGTTCA 595 consensus_4206#1 TTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGC---TCGTGTCCTACCAA 539 * ** * * ****** * * * ** * * * consensus_4206#0 AGCGGCATAAGGCCAAAATTCCGGAAAAACGGNTTAT---TGGANNACNCCNGGACNTAT 652 consensus_4206#1 AGCCTGCTGTACCCAATACTCATGACGCAAGGTATATACTCGGCCCTGTTCGTGCTGTAC 599 *** * **** * ** ** * ** *** ** * * ** consensus_4206#0 NCCAGGGGGAGGG 665 consensus_4206#1 GCGAGCAAG---- 608 * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||