These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 987 fasta sequence [CCGCGGACGCGTGGGCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATATATATATACATATTCGTACGTGTGCTGAATATTCTTAAAACAAACTCTTTGCGTCGTTCGGATCGTGTGGTCCGGAACGATCGGTTCCACCTAAGTAAACCTCTTTTGCCAAGTAGCATCGGATAATGAATCGGTAAAACGTGAGCCATATTCGTGTAGCTTAGCATGTTTAATCGTTGGTCACTCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAGACGTGGACATCGTCGTGTGTCACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTACATTGTTTTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTATGATTGGCGTGCAGAGCTTACCTTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAACTATTGTACAGGGT-T-TTAAGACGTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACAGGCTTATTTGGCGCGTAACTGAAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTACATTGGAACTTTTATAAACAAACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCCAATTTAACTCCACGCAAATGGGTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNTTGGCCTGGACTNGCAAGGTCCCGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACAAGGTGGANTCCCGGCGCAGGGTTNAACACCATTNTGATCGCACCCCANTAATTTTTTTACCACGAACAGCCACCTTGGGTGTGCCGG] [+] EMBL BM620338 [CCGCGGACGCGTGGGCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATATATATATACATATTCGTACGTGTGCTGAATATTCTTAAAACAAACTCTTTGCGTCGTTCGGATCGTGTGGTCCGGAACGATCGGTTCCACCTAAGTAAACCTCTTTTGCCAAGTAGCATCGGATAATGAATCGGTAAAACGTGAGCCATATTCGTGTAGCTTAGCATGTTTAATCGTTGGTCACTCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAGACGTGGACATCGTCGTGTGTCACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTACATTGTTTTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTATGATTGGCGTGCAGAGCTTACCTTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAACTATTGTACAGGGT T TTAAGACGTTAGTTTGCAGCGAA ] [+] EMBL AL930887 [ cccgaggTTAATCGTTGGTCAATCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTC AACAGAATCGATTATTAAACGTGGACATCGTCGTGTGTCACTGTTAAG TTTGTTTGCATACGTTGCGCATTGCGTTACATTG TTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTGTCCTATGATTGGCGTGCAGAGCTTACCTTTCATT AGGTGTGAGTGTGTCTTTTACACCCATGAACTATTGTACAGGTTCTCTAAAGACGTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACAGGCTTATTTGGCGCGTAACTGAAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTACATTGGAACTTTTATAAACAAACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCCAATTTAACTCCACGCAAATGGGTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNTTGGCCTGGACTNGCAAGGTCCCGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACAAGGTGGANTCCCGGCGCAGGGTTNAACACCATTNTGATCGCACCCCANTAATTTTTTTACCACGAACAGCCACCTTGGGTGTGCCGG] consensusID : consensus_4210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAAAAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATACATATTCGTACGTGTGCTGGAATATTCTTAAAAACAAACTCTTTTGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCGTNAGGTTGANTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGGACATTCGGGTACANAAACGGTGAAGCCCACATAATTTCGGTAGGTAGGNCTTTAAGGCAGTGGTTGTTCGACTCCGGTTTGGGTCCAAAGTCGGTACACAGGAAGCCGTAGTNACTCCCAGTGGTTATATGGGTATCCCAAANTATGG] [+] EMBL BX468819 [GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAAAAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATACATATTCGTACGTGTGCTGGAATATTCTTAAAAACAAACTCTTTTGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCGTNAGGTTGANTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGGACATTCGGGTACANAAACGGTGAAGCCCACATAATTTCGGTAGGTAGGNCTTTAAGGCAGTGGTTGTTCGACTCCGGTTTGGGTCCAAAGTCGGTACACAGGAAGCCGTAGTNACTCCCAGTGGTTATATGGGTATCCCAAANTATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4210#0 ------------------------------------------------------------ consensus_4210#1 GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAA 60 consensus_4210#0 --------------CCGCGGACGCGTGGG-----CAAACTCTCATCAGACGTATACATAG 41 consensus_4210#1 AAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAG 120 * ** * * * * ************************** consensus_4210#0 AAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATT 101 consensus_4210#1 AAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCT-GTATGTAATT 179 ************************************************* ********** consensus_4210#0 AACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACT 161 consensus_4210#1 AACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACT 239 ************************************************************ consensus_4210#0 CTGACCATATATATATATATATATACATATTCGTACGTGTGCTG-AATATTCTTAAAA-C 219 consensus_4210#1 CTGACCATATATATA--------TACATATTCGTACGTGTGCTGGAATATTCTTAAAAAC 291 *************** ********************* ************* * consensus_4210#0 AAACTCTTT-GCGTCGTTCGG-ATCG-TGTGG-TCCGG--AACGATCGG--TTCCACC-- 269 consensus_4210#1 AAACTCTTTTGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCG 351 ********* *********** **** ***** ** ** ******* * ***** consensus_4210#0 -TAAGTAAACCTCTTTTGCCAAGTAGCATCGGATAA--TGAATCGGTAAAACGTGAGCCA 326 consensus_4210#1 TNAGGTTGANTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGG---A 408 * ** * ** * * * ** ** *** *** * * *** * consensus_4210#0 TATTCGTGTAGCTTAGC----ATGTTTA-ATCGTTGGTCACTCGTCCAGACTATAATCCA 381 consensus_4210#1 CATTCGGGTACANAAACGGTGAAGCCCACATAATT--TCGGTAGGTAGGNCTTTAAGGCA 466 ***** *** * * * * * ** ** ** * * * ** *** ** consensus_4210#0 TGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAGACGTGGACATCGTCGTGTGTC 441 consensus_4210#1 GTGGTTGTTCGACTCCGGTT---TGGGTCCAA--AGTCGGTACACAGGAAGCCGTA-GTN 520 * **** * * **** * * * * * * * * *** ** consensus_4210#0 ACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTACATTGTTTTTGTCGATCAGAG 501 consensus_4210#1 ACTCCCAGTGGTTATATGGGTA--TCCCAAANTATGG----------------------- 555 *** * ** * ** ** * * * * * consensus_4210#0 GATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTATGATTGGCGTGCAGAGCTTACC 561 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 TTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAACTATTGTACAGGGTTTTAAGAC 621 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 GTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACAGGCTTATTTGGCGCGTAACTG 681 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 AAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTACATTGGAACTTTTATAAACAA 741 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 ACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCCAATTTAACTCCACGCAAATGG 801 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 GTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNTTGGCCTGGACTNGCAAGGTCC 861 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 CGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACAAGGTGGANTCCCGGCGCAGGG 921 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 TTNAACACCATTNTGATCGCACCCCANTAATTTTTTTACCACGAACAGCCACCTTGGGTG 981 consensus_4210#1 ------------------------------------------------------------ consensus_4210#0 TGCCGG 987 consensus_4210#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||