These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1092 fasta sequence [AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAAATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGCAAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGAAGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAACAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTATCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAAACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGAGGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAAAAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGAGCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGAAAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAAACAAAACCGATAAACAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTAGTGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAGGAAAACCCCGGCTCGCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAACTCTGTGTTTAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGGTACAGTNTAAAACGGCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCTCCCCCGTAACCGCCCTG] [+] EMBL BX612144 [AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAAATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGCAAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGAAGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAACAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTATCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAAACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGAGGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAAAAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTA ] [+] EMBL BX622669 [ CAGTAGTGCGAAAGGAGAGAGGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAAAAGGAGAGAGAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGAGCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGAAAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAAACAAAACCGATAAACAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTAGTGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAGGAAAACCCCGGCTCGCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAACTCTGTGTTTAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGGTACAGTNTAAAACGGCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCTCCCCCGTAACCGCCCTG] consensusID : consensus_4215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCTAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCGATCCCCCTAAAGCTTTGTTGGGTGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTTTTTGCGTTCATTTTGTGCGCCTAGGGCGCGCTGCTGCCTCCTCCACTCTTGGGGTAACCTTTTTGGGCATCGCTCGCACCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACGGTTACGTACACGTCCAAGCGCAAGAAACACACACACACACACGTACGCGCGCACAAGTCGTGTACTTCAGGAACCGAAGGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATCGCATTGTTGTCGCACACTACTCTTGGTCGTCGTTTTTATCTCTTTCACTCTGTGTGGTTTTTTGTTGTTGTTCTTGCTGGAACTTCTTCGCTCTCGGGTGGGGTTTTGTGGCGCTTTTTGCGGTGCAATCTCCTTGTCCTCTTCGTCGGTGCTCTTGGTGTGTCTGTCTTTTTGGCTAGAAGTAG] [+] EMBL BX609825 [GGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCTAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCGATCCCCCTAAAGCTTTGTTGGGTGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTTTTTGCGTTCATTTTGTGCGCCTAGGGCGCGCTGCTGCCTCCTCCACTCTTGGGGTAACCTTTTTGGGCATCGCTCGCACCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACGGTTACGTACACGTCCAAGCGCAAGAAACACACACACACACACGTACGCGCGCACAAGTCGTGTACTTCAGGAACCGAAGGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATCGCATTGTTGTCGCACACTACTCTTGGTCGTCGTTTTTATCTCTTTCACTCTGTGTGGTTTTTTGTTGTTGTTCTTGCTGGAACTTCTTCGCTCTCGGGTGGGGTTTTGTGGCGCTTTTTGCGGTGCAATCTCCTTGTCCTCTTCGTCGGTGCTCTTGGTGTGTCTGTCTTTTTGGCTAGAAGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4215#0 AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAA 60 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 ATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGC 120 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 AAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGA 180 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 AGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAA 240 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 CAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTA 300 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 TCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAA 360 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 ACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGA 420 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 GGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAA 480 consensus_4215#1 ------------------------------------------------------GGGGAA 6 *** consensus_4215#0 AAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGA 540 consensus_4215#1 AAAGAGCAAGAAAGTTCCCGTAGAG------ATATCTTGCTAGATGATGAAAAGAACAGA 60 ** *** * ***** **** *** ** * *** ***** * ***** consensus_4215#0 GCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGA 600 consensus_4215#1 A-AGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCG 119 * * * *** * * * *** ** * * consensus_4215#0 AAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAA-ACAAAACCGATAA 659 consensus_4215#1 ATCCCCCTAAAGCTTTGTTGGG--TGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTT 177 * * *** ** * * *** * * ** * * * * consensus_4215#0 ACAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAA 719 consensus_4215#1 TTTGCGTTCATTTTGTGCGCCTAGGGCGCGC---TGCTGCCTCCTCCACTCTTGGGGTAA 234 * * * *** *** * * * ** ** *** **** ** consensus_4215#0 AAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAA 779 consensus_4215#1 CCTTTTTGGGCATCGCTCGCA----CCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACG 290 * * * ** * * * * * ** * * * consensus_4215#0 GAAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTA 839 consensus_4215#1 GTTACGTACACGTCCAAGCGCAAGAA-ACACACACACACACACGTACGCGCGCACAAGTC 349 * * * ** ***** ** ** ***** ** * * ** * ** * consensus_4215#0 GTGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAG-GAAAACCCCGGC 898 consensus_4215#1 GTGTACTTCAGGAACCGAA-GGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATC 408 *** * ** ** ** * * * * * * * * * * consensus_4215#0 TCGCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAA 958 consensus_4215#1 GCATTGTTGTCGCACACTAC-TCTTG--GTCGTCGTTTTTATCTCTTTCACTCTGTGTGG 465 * *** * * * * * ** * ** * * * * * *** * consensus_4215#0 CTCTGTGTT-TAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGG 1017 consensus_4215#1 TTTTTTGTTGTTGTTCTTGCTGGAAC------TTCTTCGCTCTCGGGTGGGGTTTTGTGG 519 * * **** * *** * *** ** ***** *** * **** consensus_4215#0 TACAGTNTAAAACG--GCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCT 1075 consensus_4215#1 CGCTTTTTGCGGTGCAATCTCCTTGTCCTCTTCGTCGGT-----GCTCTTGGTGTGTCTG 574 * * * * * ** ** ** ** ** * * ** * * * consensus_4215#0 CCCCCGTAACC-GCCCTG- 1092 consensus_4215#1 TCTTTTTGGCTAGAAGTAG 593 * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||