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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence
[AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGATAAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGA-CTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA]
[+] EMBL AL930495 [AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGATAAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGA CTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGT ]
[+] EMBL BX620613 [ CTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAA GGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGACCTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA]
consensusID : consensus_4218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGATTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAATCGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAGCTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAAACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACCAAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC]
[+] EMBL BM600393 [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGATTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAATCGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAGCTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAAACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACCAAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4218#0 AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTG-CCG 59
consensus_4218#1 ------------------------------CCGCGGACGCGTGGGCGGACGCGTGGGCCG 30
* ** * *** * ** * * ***
consensus_4218#0 GACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAA--GCCGG 117
consensus_4218#1 TGCGAGACGCT------GCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTG 84
******** ** * ** * *** * * * * * ** *
consensus_4218#0 TCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGA 177
consensus_4218#1 CTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTG--GATTTGCA-GACTCGACAGACGAC 141
* * * * * ** *** * * * **** * * **
consensus_4218#0 GATAAACGAGTCG---GCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCT 234
consensus_4218#1 GGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTT 201
* * **** * ****** ** ** *** * * *** * * *
consensus_4218#0 GCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCC 294
consensus_4218#1 GTGCGAAAGCAGGAACCAATTTCTCTGGCCCGA-CAAAATCGCACGATGAAGC--GTAAC 258
* *** * ** * * ** **** ** * *** ** ** *
consensus_4218#0 GACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGT-CTACCAGC 353
consensus_4218#1 CAC---TGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGAT 315
** * * *** * * * * * *** ** * * * * * *
consensus_4218#0 TGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATG 413
consensus_4218#1 CTCGTGCTGACGATGAGCAA--GATGGACAAATTCCAGCAGATCAAGCTGCCGTACAC-- 371
* ** * * * **** **** ** * * ** * ** **
consensus_4218#0 GACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATG 473
consensus_4218#1 --CATC-ACCAGAGAGA--AGCGCGTACCGCTAAAGAACCCGC--TCGTCACGCAAACGG 424
**** ***** * * ** * * ** ****** ** *** * ** *
consensus_4218#0 CAGAAGCTGGGCGACTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACT 533
consensus_4218#1 TGGAGGTCATGAAGCAGACCGAAATGATCCAAACG---CTCATCGACACGTACTCCACCA 481
** * * * ** ** * * * * * * **** ** * ** *
consensus_4218#0 CGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCG 593
consensus_4218#1 AGTCGGGCTGCA--ACTACATACTGAAC---------CCGTGCCAGCT-----GATGCCG 525
**** * *** ** * ** * ** * * ** ** * * **
consensus_4218#0 AAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGC 653
consensus_4218#1 A--CCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGC 583
* * ** * * * * ** * * * * ** * * * * * *****
consensus_4218#0 AGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTAT---CAGGCCGATTCTTCGTCAC 710
consensus_4218#1 GCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC---------- 633
* ** * *** * ** ** * ** * * ** ***
consensus_4218#0 AGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAAC 770
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTG 830
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAA 890
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 TCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGC 950
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 A 951
consensus_4218#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||