cluster # 4221

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Anopheles gambiae
cluster # 4221 cluster # 4221 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4221#0 length = 868 sequences # 1

consensus_4221#1 length = 764 sequences # 2

consensusID : consensus_4221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 868
fasta sequence

                              [CAGAATCGGCACGAGGTTTAAGGACGACGAGGAACGATCGTCCCAGCTGTTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGATCGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCCACAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAAAACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAAAAGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGGCTACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCGGAATGATCTGTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTCATCGAGACGGGGGATTGGACCGAAAGCGATT]

[+] EMBL BX468633             [CAGAATCGGCACGAGGTTTAAGGACGACGAGGAACGATCGTCCCAGCTGTTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGATCGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCCACAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAAAACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAAAAGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGGCTACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCGGAATGATCTGTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTCATCGAGACGGGGGATTGGACCGAAAGCGATT]




>consensus_4221#0
CAGAATCGGCACGAGGTTTAAGGACGACGAGGAACGATCGTCCCAGCTGTTCGACCAGGA
AGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGA
TCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATG
ATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGAT
CGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCCA
CAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAAA
ACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAAA
AGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGGC
TACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCG
GGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAA
GAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACC
GGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGACG
GCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCGG
AATGATCTGTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTCATC
GAGACGGGGGATTGGACCGAAAGCGATT

consensusID : consensus_4221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 764
fasta sequence

                              [AGGACGACGAGGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGCGGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAAGCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCCCGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGGCTGCGGNCAGCCTGCTGATGCGGGAAAGCAGTTCCATCATCCAG]

[+] EMBL BX629297             [AGGACGACGAGGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGCGGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAAGCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCCCGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGGCTGCGGNCAGCCTGCTGATGCGGGAAAGCAG             ]
[+] EMBL BX629190             [          GGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGCGGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAAGCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCCCGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGGCTGCGGNCAGCCTGCTGATGCGGGAAAGCAGTTCCATCATCCAG]




>consensus_4221#1
AGGACGACGAGGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACG
TATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGA
AAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGG
ATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGC
GGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAA
GCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCC
CGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGC
CGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGT
GGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGT
TCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGC
CGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCG
ACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGG
CTGCGGNCAGCCTGCTGATGCGGGAAAGCAGTTCCATCATCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4221#0      CAGAATCGGCACGAGGTTTAAGGACGACGAGGAAC-GATCGTCCCAGCTGTTCGACCAGG 59
consensus_4221#1      --------------------AGGACGACGAGGAACCGATCGTCC-AGCTGT-CGACCAGG 38
                                          *************** ******** ****** ********

consensus_4221#0      AAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACG 119
consensus_4221#1      AAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACG 98
                      ************************************************************

consensus_4221#0      ATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGAT 179
consensus_4221#1      ATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGAT 158
                      ************************************************************

consensus_4221#0      GATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGA 239
consensus_4221#1      GATCCCGTGCTGACGGTGACGGATACCGAT-GACGATTCACT-GATCGAGA---TGAAGA 213
                      ****************************** *********** *******      ****

consensus_4221#0      TCGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCC 299
consensus_4221#1      TCGGC---AAGGCGAAGCGCG----ACTATTCGCGGC-GCCGGCTGGCCGAC--GAGGC- 262
                      ****    * **** *  ***    ************ **************  ***** 

consensus_4221#0      ACAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAA 359
consensus_4221#1      ACAGAAG-----CTGCGCG-ACGACCT-GGC--GGGACATT----CGCGAAGCGAGGAAA 309
                      ***  *       ****** ******* ***  ********    **  * *********

consensus_4221#0      AACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAA 419
consensus_4221#1      ------CAGAGGGCCG--TTCGCT-GCGGAAGCTGCG--CGAT-CGCGATCGCTCGGAAA 357
                             ** ******  ****** ************  **** ************* **

consensus_4221#0      AAGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGG 479
consensus_4221#1      G---CCCGTT-CGTGG-TGCAGG-ACGATGAGCC-GAGCGAG--AAAATGAAACGAA--G 406
                          ****** ***** ****** ********** *******  * ***********  *

consensus_4221#0      CTACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATC 539
consensus_4221#1      CTACTCG-TCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATC 465
                      ******* ****************************************************

consensus_4221#0      GGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGA 599
consensus_4221#1      GGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGA 525
                      ************************************************************

consensus_4221#0      AGAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTAC 659
consensus_4221#1      AGAACGCGGCTGCGTTCCAG-AAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTAC 584
                      ******************** ***************************************

consensus_4221#0      CGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGAC 719
consensus_4221#1      CGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCG-AGAACGGGAACATTCGGACGAC 643
                      ************************************* **********************

consensus_4221#0      GGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCG 779
consensus_4221#1      GGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAA-TGCGATCAT-GCTGAA-TCG 700
                      *************************************** ********* *****  ***

consensus_4221#0      GAATGATCT--GTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTC 837
consensus_4221#1      GAATGATCTCTGTTCGCCGGCTGCGGNCAG-CCTGCTGATGCGGGAAAGCAGTTCCAT-C 758
                      *********  *************** *** *********************** *** *

consensus_4221#0      ATCGAGACGGGGGATTGGACCGAAAGCGATT 868
consensus_4221#1      ATCCAG------------------------- 764
                      *** **