cluster # 4222

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Anopheles gambiae
cluster # 4222 cluster # 4222 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4222#0 length = 777 sequences # 2

consensus_4222#1 length = 568 sequences # 1

consensusID : consensus_4222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 777
fasta sequence

                              [ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTATGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGACGGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGTCCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAACAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCCTTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAATTCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGACCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA]

[+] EMBL BX610602             [ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTATGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGACGGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGTCCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAACAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCCTTATTCGTAGACTGGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX609196             [                                                                                                                                                          ATGCGAGAACGTGCGAGTGAAGCTGTCCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAACAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCCTTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAATTCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGACCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA]




>consensus_4222#0
ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTA
TGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGAC
GGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGT
CCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAA
CAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCC
TTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAAT
TCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGA
CCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAG
AGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCAC
GAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACT
AAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGC
TGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGA
GATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA

consensusID : consensus_4222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGATCTTCGTGTTCCAGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTGCGCTTCAATTACCTAAAAAAAAGAACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATTAGGTGGCTAAGAACGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAGTCTTCAGAGGAACAGTATTTCTGTGTTGAAAAATGTAGTGT]

[+] EMBL BM654982             [TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGATCTTCGTGTTCCAGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTGCGCTTCAATTACCTAAAAAAAAGAACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATTAGGTGGCTAAGAACGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAGTCTTCAGAGGAACAGTATTTCTGTGTTGAAAAATGTAGTGT]




>consensus_4222#1
TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGATCTTCGTGTTCC
AGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGT
AATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCACGAATTGGAAAGT
TAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGAC
ACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGC
GAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTT
AGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTGCGCTTCAATTACCTAAAAAAAAGA
ACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATTAGGTGGCTAAGAA
CGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAGTCTTCAGAGGAAC
AGTATTTCTGTGTTGAAAAATGTAGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4222#0      ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTA 60
consensus_4222#1      ------------------------------------------------------------
                                                                                  

consensus_4222#0      TGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGAC 120
consensus_4222#1      ------------------------------------------------------------
                                                                                  

consensus_4222#0      GGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGT 180
consensus_4222#1      ------------------------------------------------------------
                                                                                  

consensus_4222#0      CCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAA 240
consensus_4222#1      ------------------------------------------------------------
                                                                                  

consensus_4222#0      CAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCC 300
consensus_4222#1      ------------------------------------------------------------
                                                                                  

consensus_4222#0      TTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAAT 360
consensus_4222#1      ------------------------------------------------------------
                                                                                  

consensus_4222#0      TCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGA 420
consensus_4222#1      ------------TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGA 48
                                   *** *      **  *  *****************************

consensus_4222#0      CCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAG 480
consensus_4222#1      TCTTCGTGTTCCAGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAG 108
                       ************************ **********************************

consensus_4222#0      AGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCAC 540
consensus_4222#1      AGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCAC 168
                      **************************************** *******************

consensus_4222#0      GAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACT 600
consensus_4222#1      GAATTGGAAAGTTAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACT 228
                      **************************** *******************************

consensus_4222#0      AAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGC 660
consensus_4222#1      AAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGC 288
                      ************************************************************

consensus_4222#0      TGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGA 720
consensus_4222#1      TGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGA 348
                      ************************************************************

consensus_4222#0      GATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA--- 777
consensus_4222#1      GATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTT-GCGCTTCAATTA 407
                      *********************************************** *********   

consensus_4222#0      ------------------------------------------------------------
consensus_4222#1      CCTAAAAAAAAGAACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATT 467
                                                                                  

consensus_4222#0      ------------------------------------------------------------
consensus_4222#1      AGGTGGCTAAGAACGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAG 527
                                                                                  

consensus_4222#0      -----------------------------------------
consensus_4222#1      TCTTCAGAGGAACAGTATTTCTGTGTTGAAAAATGTAGTGT 568