These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 777 fasta sequence [ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTATGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGACGGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGTCCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAACAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCCTTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAATTCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGACCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA] [+] EMBL BX610602 [ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTATGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGACGGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGTCCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAACAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCCTTATTCGTAGACTGGCTGC ] [+] EMBL BX609196 [ ATGCGAGAACGTGCGAGTGAAGCTGTCCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAACAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCCTTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAATTCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGACCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA] consensusID : consensus_4222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGATCTTCGTGTTCCAGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTGCGCTTCAATTACCTAAAAAAAAGAACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATTAGGTGGCTAAGAACGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAGTCTTCAGAGGAACAGTATTTCTGTGTTGAAAAATGTAGTGT] [+] EMBL BM654982 [TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGATCTTCGTGTTCCAGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAGAGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCACGAATTGGAAAGTTAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACTAAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGCTGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGAGATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTGCGCTTCAATTACCTAAAAAAAAGAACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATTAGGTGGCTAAGAACGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAGTCTTCAGAGGAACAGTATTTCTGTGTTGAAAAATGTAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4222#0 ATTTTGGACGAAATCAATCCGGATGAAAACTACTGCGAAGAGGACGATGATCTCTCATTA 60 consensus_4222#1 ------------------------------------------------------------ consensus_4222#0 TGAGATTCGATGGAGCTGTTCTCGGACTTCATTCAATACGTCACGCTTAACTAGAGTGAC 120 consensus_4222#1 ------------------------------------------------------------ consensus_4222#0 GGAAGTACCGTTCGTCGGATGCCGAAGTTGGCCAATGCGAGAACGTGCGAGTGAAGCTGT 180 consensus_4222#1 ------------------------------------------------------------ consensus_4222#0 CCCGAAAACAGTTCCTGCAAGCGCTTTGAACAAAAAACAAAGAAAGATGATCGACAACAA 240 consensus_4222#1 ------------------------------------------------------------ consensus_4222#0 CAACAAGCAAAGAAAACCTATTTCCTCCGGTGTTGTAGGCGAGTTTTAATGCATTTATCC 300 consensus_4222#1 ------------------------------------------------------------ consensus_4222#0 TTATTCGTAGACTGGCTGCATGAGTTCGGCAAGACGTTAAGCGAGCGCAGTAGCGCAAAT 360 consensus_4222#1 ------------------------------------------------------------ consensus_4222#0 TCGGTCATTTTAAACTTTAGACGGGACCAGACAGACGACAACCTTCCAGTTCCTATGCGA 420 consensus_4222#1 ------------TACTGTTCCTCTGAAGACTCAGACGACAACCTTCCAGTTCCTATGCGA 48 *** * ** * ***************************** consensus_4222#0 CCTTCGTGTTCCAGTCAGATTCTAAGTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAG 480 consensus_4222#1 TCTTCGTGTTCCAGTCAGATTCTAACTCGTGTTCCAGTCCCAAAAGCAAAGGAGAGATAG 108 ************************ ********************************** consensus_4222#0 AGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGAGCTTCGTAGCTTGTGGCAC 540 consensus_4222#1 AGAGAAAAGAGTAATGCAAAATTTAGTTACCATTTACTTGTGCTTCGTAGCTTGTGGCAC 168 **************************************** ******************* consensus_4222#0 GAATTGGAAAGTTAGTTTCCCAGTATTAGTTGTCGTTAGCGTTACGTAAAGATGAAAACT 600 consensus_4222#1 GAATTGGAAAGTTAGTTTCCCAGTATTAATTGTCGTTAGCGTTACGTAAAGATGAAAACT 228 **************************** ******************************* consensus_4222#0 AAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGC 660 consensus_4222#1 AAAGCATCGGACACACAGTATCTGTTCTGCTCGCCTTCCGCTCTCGTACGGTGAGGGGGC 288 ************************************************************ consensus_4222#0 TGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGA 720 consensus_4222#1 TGTATTATTAGCGAAAGTATTATTAACCTTTTAGCCGGCTTAACACGCGAAAAGGATCGA 348 ************************************************************ consensus_4222#0 GATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTTTGCGCTTCAA--- 777 consensus_4222#1 GATCTTTGGTTTAGCTTGCACAAGTTTTGCATTAACACCGTTTTTTT-GCGCTTCAATTA 407 *********************************************** ********* consensus_4222#0 ------------------------------------------------------------ consensus_4222#1 CCTAAAAAAAAGAACAAAACACCAAACACGATTTAGGCAGGCGCATGTAACACCAATATT 467 consensus_4222#0 ------------------------------------------------------------ consensus_4222#1 AGGTGGCTAAGAACGTTGCTTCAAGTGCGAGAGGAATGCAAGGGAATGGTGCCAACTGAG 527 consensus_4222#0 ----------------------------------------- consensus_4222#1 TCTTCAGAGGAACAGTATTTCTGTGTTGAAAAATGTAGTGT 568 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||