These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [CCGGCGACAACGTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGAAAACAAAACAACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA] [+] EMBL BM621251 [CCGGCGACAACGTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGAAAACAAAACAACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCC ] [+] EMBL BM583265 [ GTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGAAAACAAAACAACGAATACCTACAGTTGAAATT AAAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA] consensusID : consensus_4223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTTAAACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTTGCAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCG] [+] EMBL BM624314 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTTAAACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTTGCAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4223#0 CCGGCGACAACGTTAACGGA-----AGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTT 55 consensus_4223#1 -CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTT 59 * *** *** **** ********************************** consensus_4223#0 GCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGA 115 consensus_4223#1 GCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGA 119 ************************************************************ consensus_4223#0 AGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAA 175 consensus_4223#1 AGAAAATAGCAGCAAAAGTGAA-GCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAA 178 ********************** ************************************* consensus_4223#0 AGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAA------TCAAAGAGTTTT 229 consensus_4223#1 AGTGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTT 238 ****************** *********************** ************ consensus_4223#0 AAACAGAGAGAAAACAAAAC-AACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAAC 288 consensus_4223#1 AAACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAA--C 296 *********** ** ***** *** **** ************** ************ * consensus_4223#0 AACAAATCACGTTCTCGGTGCAGCATCGACAAAAAA-GATTCATCAATTTTTTGAGTGCG 347 consensus_4223#1 AACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCG 356 ************************************ *********************** consensus_4223#0 AATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACG 407 consensus_4223#1 AATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACG 416 ******************************************** *************** consensus_4223#0 CTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCA 467 consensus_4223#1 CTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCA 476 ************************************************************ consensus_4223#0 ATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAA 527 consensus_4223#1 ATTTGGCAGTTGCAAAAAA-CAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAA 535 ********** ******** **************************************** consensus_4223#0 AACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA 574 consensus_4223#1 AACATCCATCG------------------------------------ 546 *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||