cluster # 4224

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Anopheles gambiae
cluster # 4224 cluster # 4224 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4224#0 length = 1313 sequences # 2

consensus_4224#1 length = 623 sequences # 1

consensusID : consensus_4224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1313
fasta sequence

                              [AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCTAACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGCGCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATGATGATTTTTTTGCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTGTTTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGCTGAACTATACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAATCAGAATTGCGTCGTGGGAGTGCGGGGTAAAACACGCAATTTCGTAGAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACGTGAAACACAAGATTTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTTATTTTTCCACTAGTTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTTGTCGCGTCGCTGCTCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATTATAAGGACCAAGAAATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAACCGACTCTCGTCATCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCTTGTATAGAAACGCATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAAGAGCCTTCTTTATGCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTGGTTTCAACTTAGGGAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAATCTTGCGTCGACCGNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNTTATATC]

[+] EMBL BX625577             [AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCTAACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGCGCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATGATGATTTTTTTGCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTGTTTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGCTGAACTATACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAATCAGAATTGCGTCGTGGGAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX623806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AACTATACTATTTTGTACACACTATTATGNTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGANAATCANAATTGCGTCGTGGGAGTGCGGGGTAAAACACGCAATTTCGTAGAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACGTGAAACACAAGATTTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTTATTTTTCCACTAGTTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTTGTCGCGTCGCTGCTCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATTATAAGGACCAAGAAATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAACCGACTCTCGTCATCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCTTGTATAGAAACGCATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAAGAGCCTTCTTTATGCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTGGTTTCAACTTAGGGAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAATCTTGCGTCGACCGNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNTTATATC]




>consensus_4224#0
AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCT
AACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGC
GCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATG
ATGATTTTTTTGCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTGT
TTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAAA
AAATTCCATCTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATAC
GATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAA
CGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGA
GAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAAC
AGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGCTGAA
CTATACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCG
CATCCAGGGGAAAATCAGAATTGCGTCGTGGGAGTGCGGGGTAAAACACGCAATTTCGTA
GAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACGTGAAACACAAGAT
TTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTTATTTTTCCACTAG
TTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTTGTCGCGTCGCTGC
TCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATTATAAGGACCAAGA
AATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAACCGACTCTCGTCA
TCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCTTGTATAGAAACGC
ATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAAGAGCCTTCTTTAT
GCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTGGTTTCAACTTAGG
GAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAATCTTGCGTCGACC
GNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNTTATATC

consensusID : consensus_4224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATGAAGTTTTTTTTTGCATTATTGAGACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTGTTTTCGAAACGACTTTTTCGTATTATGCTTCTTTTCTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATTAATGGAACTGATCCACAAAACAAACACACAACGAAAGCTGAACTACTATACTATTTTGTACACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAGGCAAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATCACCCAATTTCGTAGAGCAGCAGCAGCAGCAGCAGCAGGAACGGTGC]

[+] EMBL BM594969             [CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATGAAGTTTTTTTTTGCATTATTGAGACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTGTTTTCGAAACGACTTTTTCGTATTATGCTTCTTTTCTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATTAATGGAACTGATCCACAAAACAAACACACAACGAAAGCTGAACTACTATACTATTTTGTACACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAGGCAAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATCACCCAATTTCGTAGAGCAGCAGCAGCAGCAGCAGCAGGAACGGTGC]




>consensus_4224#1
CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATGAAGTTTTTTTTTGCATTATTGA
GACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTGTTTTCGAAACGACTTTTTCGTA
TTATGCTTCTTTTCTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTTGTT
AATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACAC
CAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCAT
TTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGAGACCCTAAACTATTTAT
AGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATTA
ATGGAACTGATCCACAAAACAAACACACAACGAAAGCTGAACTACTATACTATTTTGTAC
ACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAGGC
AAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATCACCCAATTTCGTAGAGCAGCAGC
AGCAGCAGCAGCAGGAACGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4224#0      AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCT 60
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      AACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGC 120
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      GCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATG 180
consensus_4224#1      ----------------------CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATG 38
                                                *   * * ** ***********************

consensus_4224#0      ATGATTTTTTT-GCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTG 239
consensus_4224#1      AAGTTTTTTTTTGCATTATTGAGACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTG 98
                      * * ******* ********************* **************************

consensus_4224#0      TTTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAA 299
consensus_4224#1      TTTTCGAAACGACTTTTTCGTATTATGCTTCTTTTCT-ATTTCTTTGTTTCTTTTGACAA 157
                      **** ********************* ******** * **********************

consensus_4224#0      AAAATTCCATCTTTTTTTT-GTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTAT 358
consensus_4224#1      AAAATTCCATCTTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTAT 217
                      ******************* ****************************************

consensus_4224#0      ACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAAT 418
consensus_4224#1      ACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAAT 277
                      ************************************************************

consensus_4224#0      AACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGA 478
consensus_4224#1      AACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGA 337
                      ************************************************************

consensus_4224#0      GAGAGA--CCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCA 536
consensus_4224#1      GAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCA 397
                      ******  ****************************************************

consensus_4224#0      TAACAGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGC 596
consensus_4224#1      TAACAGCATAAAACAATCGATTAATGGAACTGATCCACAAAACAAACACACAACGAAAGC 457
                      ********************* ** ***  **** *************************

consensus_4224#0      TGAACTA---TACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGT 653
consensus_4224#1      TGAACTACTATACTATTTTGTACACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGT 517
                      *******   ********************** ***************************

consensus_4224#0      TTCCGCGCATCCAGGGGAAA-----ATCAGAATTGCGTCGTGGGAGTGCGGGG-TAAAAC 707
consensus_4224#1      TTCCGCGCATCCAGGGGAAAGGCAAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATC 577
                      ********************     *********************** **** **** *

consensus_4224#0      ACGCAATTTCGTAGAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACG 767
consensus_4224#1      ACCCAATTTCGTAGAGCAGCAGCAGCAGCAGCAGCAGGAACGGTGC-------------- 623
                      ** **************************** **************              

consensus_4224#0      TGAAACACAAGATTTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTT 827
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      ATTTTTCCACTAGTTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTT 887
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      GTCGCGTCGCTGCTCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATT 947
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      ATAAGGACCAAGAAATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAA 1007
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      CCGACTCTCGTCATCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCT 1067
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      TGTATAGAAACGCATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAA 1127
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      GAGCCTTCTTTATGCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTG 1187
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      GTTTCAACTTAGGGAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAA 1247
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      TCTTGCGTCGACCGNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNT 1307
consensus_4224#1      ------------------------------------------------------------
                                                                                  

consensus_4224#0      TATATC 1313
consensus_4224#1      ------