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Anopheles gambiae
cluster # 4226 cluster # 4226       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4226#0 length = 723 sequences # 1  
consensus_4226#1 length = 716 sequences # 1  
consensus_4226#2 length = 448 sequences # 1  

consensusID : consensus_4226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence
                              [AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATAGCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAAAAA]

[+] EMBL AL932596             [AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATAGCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAAAAA]


>consensus_4226#0 AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATA GCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATC GCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTC ACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCAC GGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGAC TTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTT AATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAG AACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTG TTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCT CGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACC TTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNC CTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAA AAA



consensusID : consensus_4226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence
                              [CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATCCCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGAAATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCGATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC]

[+] EMBL BX624686             [CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATCCCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGAAATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCGATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC]


>consensus_4226#1 CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATC CCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTT TTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAG CACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTA ATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCAC GATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGC AGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCA CGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGA AATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCG TGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCG ATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACG GCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC



consensusID : consensus_4226#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence
                              [CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAACGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGCACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAAGGTTGGTCTGGT]

[+] EMBL BM603028             [CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAACGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGCACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAAGGTTGGTCTGGT]


>consensus_4226#2 CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTC ACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAA CGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTC GGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGG CTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTA GGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGC ACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATG AAAGCAATATAATAAAGGTTGGTCTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4226#0      AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATA 60
consensus_4226#1      ------------------------------------------------------------
consensus_4226#2      ------------------------------------------------------------
                                                                                  

consensus_4226#0      GCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATC 120
consensus_4226#1      ---------------CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATC 45
consensus_4226#2      -----------------------------CCGGCCGCTCGCGGCGTGCGGCAC--AGTTT 29
                                                    ***  *  **  * *****  **  *  * 

consensus_4226#0      GCTCGTA-TAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACT 179
consensus_4226#1      GCTCGT--TAATAGATCCCCCATACAGTATT-CGTAGCTGGGTGTGCTGTTTTCTATACT 102
consensus_4226#2      GTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTT 89
                      * *  *  ****  *      **  * * *  * *  *      *     * *** *  *

consensus_4226#0      CACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCA 239
consensus_4226#1      CACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCA 162
consensus_4226#2      TCCTTCT-----CCCTGGAGTGATCGCCTGCAA---GAACGCCAACCATGCAAGAAAGGA 141
                        **  *       **    * *  ** *       ***  *** *  *** *  **  *

consensus_4226#0      CGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGA 299
consensus_4226#1      CGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGA 222
consensus_4226#2      TAGAATGCTAAA----ATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGC 197
                        * *  **       *  **** *    *      **   ** *  * ***** * ** 

consensus_4226#0      CTTCT---TGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACC 356
consensus_4226#1      CTTCT---TGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGG-CGTCTTTTGCAAAACC 278
consensus_4226#2      CCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTT 257
                      * ***   * *    **  *       ****     * ** **   * *** **      

consensus_4226#0      ATTTAATTAAAATT--AACTTCACGA---TTATTAGGCCGCCTGGTGG---AGGGCGACG 408
consensus_4226#1      ATTTAATTAAAATT--AACTTCACGA---TTATTAGGCCGCCTGGTGG---AGGGCGACG 330
consensus_4226#2      AAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTT 317
                      *     * * ****  *** *  **     *******  *   *** *   * ** *   

consensus_4226#0      GATGGGGTGAAGAAC-TGCCCAG---CTTAGCGCAGTACCTTTCACACATACGCACCGCG 464
consensus_4226#1      GATGGGGTGAAGAAC-TGCCCAG---CTTAGCGCAGTACCTTTCACACATACGCACCGCG 386
consensus_4226#2      AGTTAGATGTTAATTATGACTAGATACTTGGC-CGGTACGTGGCACAAAAAAGCGCCGTA 376
                        *  * **   *   ** * **   *** ** * **** *  **** * * ** ***  

consensus_4226#0      TCGTT-GTTCCTGTTTGTTGGCATTGCCGC-AGCACGGGACATCCAGCCAGGGCTTTCTG 522
consensus_4226#1      TCGTT-GTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTT-TG 444
consensus_4226#2      AGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAA 436
                        **  * * * ***   **  *    *   *  ***  * **  *  **      *   

consensus_4226#0      CACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACG 582
consensus_4226#1      CAC--GATGTATACTCCTCGC-ACTGCACAGA---CCGCTGAA-ATCGA------TCGGT 491
consensus_4226#2      GGTTGGTCTGGT------------------------------------------------ 448
                                 *                                                

consensus_4226#0      AGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGG 642
consensus_4226#1      AGAGAAATTAATTAAAC-TTGTTT-TTCAGAA-GCGAA---CGTGGGGTATT-------G 538
consensus_4226#2      ------------------------------------------------------------
                                                                                  

consensus_4226#0      GGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATG 702
consensus_4226#1      CGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTG--CTTCAAAC-TG 595
consensus_4226#2      ------------------------------------------------------------
                                                                                  

consensus_4226#0      AGCCGAACTACCGGCCAAAAA--------------------------------------- 723
consensus_4226#1      ACGCGA--TACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAA 653
consensus_4226#2      ------------------------------------------------------------
                                                                                  

consensus_4226#0      ------------------------------------------------------------
consensus_4226#1      TCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTT 713
consensus_4226#2      ------------------------------------------------------------
                                                                                  

consensus_4226#0      ---
consensus_4226#1      CAC 716
consensus_4226#2      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)