cluster # 4229

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Anopheles gambiae
cluster # 4229 cluster # 4229 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4229#0 length = 456 sequences # 1

consensus_4229#1 length = 432 sequences # 2

consensusID : consensus_4229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTTTGTTTATATCCAGTGTCCGTGTGCCGTGTGTTTGACCCTCGTTGCCGCCCATATATCTAACCCTTTGGTGCCACGTCAAGCAGAAACATTGCGATAGTCTTGCGAAATCTGCTGGCCTAGAATGAGAAGTCGGCCTAGAACGGAATACATGATTGCTTAGTTCTTTCGTCATACATGAAGAGCTTCCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAAAAATCTACGCTTAGGTGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGTTTTCTATCGAATTTCACTGGTGCATAGTGCAATAATTCAGTTTTTTATGGG]

[+] EMBL BX616663             [AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTTTGTTTATATCCAGTGTCCGTGTGCCGTGTGTTTGACCCTCGTTGCCGCCCATATATCTAACCCTTTGGTGCCACGTCAAGCAGAAACATTGCGATAGTCTTGCGAAATCTGCTGGCCTAGAATGAGAAGTCGGCCTAGAACGGAATACATGATTGCTTAGTTCTTTCGTCATACATGAAGAGCTTCCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAAAAATCTACGCTTAGGTGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGTTTTCTATCGAATTTCACTGGTGCATAGTGCAATAATTCAGTTTTTTATGGG]




>consensus_4229#0
AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGA
TAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTTTGTTT
ATATCCAGTGTCCGTGTGCCGTGTGTTTGACCCTCGTTGCCGCCCATATATCTAACCCTT
TGGTGCCACGTCAAGCAGAAACATTGCGATAGTCTTGCGAAATCTGCTGGCCTAGAATGA
GAAGTCGGCCTAGAACGGAATACATGATTGCTTAGTTCTTTCGTCATACATGAAGAGCTT
CCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAAAAATCTACGCTTAGG
TGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGTTTTCTATCGAATTTC
ACTGGTGCATAGTGCAATAATTCAGTTTTTTATGGG

consensusID : consensus_4229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 432
fasta sequence

                              [GCTGGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTACTAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCCTCCCCATTTCCC]

[+] EMBL BX627281             [GCTGGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTACTAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATT                ]
[+] EMBL BX625546             [   GGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTACTAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCCTCCCCATTTCCC]




>consensus_4229#1
GCTGGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTA
GGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGA
AGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGC
ACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGC
GAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATA
AGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTAC
TAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCC
TCCCCATTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4229#0      AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGA 60
consensus_4229#1      --------------------------------------GCTGGGTAACGTTTTAGCTAGA 22
                                                            *** ******************

consensus_4229#0      TAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTT----- 115
consensus_4229#1      TAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTG 82
                      ********************************* *********************     

consensus_4229#0      TGTTTATATCCAGTGTCCGTGTGCCGT----GTGTTTGACCCTCGTTGCCGCCCATA--- 168
consensus_4229#1      TTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCA 142
                      * *** **   *  **    *  **      * *    *  *  *  *  ***   *   

consensus_4229#0      -TATCTAACCCTTTGGTGCCACGTCAAGCAGAAACATTGCGATAGT-CTTGCGAAATCTG 226
consensus_4229#1      GCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCA 202
                        * *    **  *    **  *  *** *   * *   * * *   *   *****    

consensus_4229#0      CTGGCCTAGAATGAGAAGTCGGCCTAGAACGGAATA-CATGATTGCTTAGTTCTTTCGTC 285
consensus_4229#1      GCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTG--TGCGAAGAA 260
                         *   * *   *      *    ***  *  * * *  **  ****   *     *  

consensus_4229#0      ATACATGAAGAGCTTCCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAA 345
consensus_4229#1      AGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCT 320
                      *   **      ** *  * *   **  **  *  *  *  *    *   ** *  **  

consensus_4229#0      AAATCTACGCTTAGGTGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGT 405
consensus_4229#1      AACTGAAATTTAGGTTTACCTACACACACACACATCTTACTA-GTAGCAGCAAAT-ATAC 378
                      ** *  *   *  * * *  **     *   ** * **   * ***  *   * * **  

consensus_4229#0      TTTCTATCGAATTTCACTGGTGCATAGTGCA-ATAATTCAGTTTTTTATGGG-- 456
consensus_4229#1      GAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCCTCCCCATTTCCC 432
                               * * *   * *    ***   * * ****    *    **