cluster # 423

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Anopheles gambiae
cluster # 423 cluster # 423 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_423#0 length = 694 sequences # 1

consensus_423#1 length = 617 sequences # 1

consensusID : consensus_423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAGGCTTAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGGATTACTACACCCCGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTTTCTTCTATTTTAATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGCAATGCAAAATGGCGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAATCACTGCAAACACAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTTCTTTGATAGGATTATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCCACCACGCAGTACCATTTAGTAGTGATGCATGCAAGCAAACGTGCCGCGCCCAAGAAGGATAATAAAATCGAAAACACAGTACACTATATTTATGACCAGGGAATCC]

[+] EMBL BM624602             [ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAGGCTTAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGGATTACTACACCCCGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTTTCTTCTATTTTAATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGCAATGCAAAATGGCGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAATCACTGCAAACACAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTTCTTTGATAGGATTATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCCACCACGCAGTACCATTTAGTAGTGATGCATGCAAGCAAACGTGCCGCGCCCAAGAAGGATAATAAAATCGAAAACACAGTACACTATATTTATGACCAGGGAATCC]




>consensus_423#0
ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTACAACAAGGA
AAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGTTTCCAGCGCGAC
CGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCT
CAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAGGCT
TAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGGATTACTACACCC
CGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTTTCTTCTATTTTA
ATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGCAATGCAAAATGG
CGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAATCACTGCAAACA
CAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTTCTTTGATAGGAT
TATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCCACCACGCAGTAC
CATTTAGTAGTGATGCATGCAAGCAAACGTGCCGCGCCCAAGAAGGATAATAAAATCGAA
AACACAGTACACTATATTTATGACCAGGGAATCC

consensusID : consensus_423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTGGTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGAGGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGAGCCGACTTACTGTCTGTGTGATCAGATTTCATTCGGCGAAATGATCCTCTGTGATAATGATCTCTGCCCGATCGAGTGGTTCCACTTCAGCTGCGTTTCGCTAATCTCGAAACCGAAGGGACGCTGGTTCTGCCCGAACTGCCGTGGCGACCGGCCGAACGTGATGAAACCGAAAGCACAATTCCTCAAGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAGGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAAGCTTAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGGCTCTCCAGCGTGGGACT]

[+] EMBL BM646486             [CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTGGTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGAGGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGAGCCGACTTACTGTCTGTGTGATCAGATTTCATTCGGCGAAATGATCCTCTGTGATAATGATCTCTGCCCGATCGAGTGGTTCCACTTCAGCTGCGTTTCGCTAATCTCGAAACCGAAGGGACGCTGGTTCTGCCCGAACTGCCGTGGCGACCGGCCGAACGTGATGAAACCGAAAGCACAATTCCTCAAGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAGGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAAGCTTAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGGCTCTCCAGCGTGGGACT]




>consensus_423#1
CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTG
GTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGA
GGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGAGCCGACTT
ACTGTCTGTGTGATCAGATTTCATTCGGCGAAATGATCCTCTGTGATAATGATCTCTGCC
CGATCGAGTGGTTCCACTTCAGCTGCGTTTCGCTAATCTCGAAACCGAAGGGACGCTGGT
TCTGCCCGAACTGCCGTGGCGACCGGCCGAACGTGATGAAACCGAAAGCACAATTCCTCA
AGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAGG
TTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCC
GCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAG
TTGTCTTGTTTCGTGTTTTTAAGCTTAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGG
CTCTCCAGCGTGGGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_423#0      ---------ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTA 51
consensus_423#1      CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTG 60
                              *     **  * *** * * ** ****    * *  * **  **  ** * 

consensus_423#0      CAACAAG---GAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGT 108
consensus_423#1      GTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGA 120
                        * *    *   * ** ** *** ** * *  *       *    *      ***** 

consensus_423#0      TTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAA 168
consensus_423#1      ----GGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGA--GC 174
                          *   *  **  *  *  * ** ** *** *     *  **   ***   **    

consensus_423#0      TGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCG 228
consensus_423#1      CGACTTACTGTCTGTGTGATCAGATTTCATTCGGCGA-----AATGATCCTCTGTGATAA 229
                      * * * * *       ** ** ****   *  ***      **   *  ***    *  

consensus_423#0      TGTTTTTAGGCTTAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGG 288
consensus_423#1      TGATCTCTG-CCCGATCGAGTGGTTCCACTTC--AGCTGC-----GTTTCGCTAATCTCG 281
                     ** * *  * *   * *   *  ** ** ***  * *        *  ** * *   * *

consensus_423#0      ATTACTACACCCCGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTT 348
consensus_423#1      AAACCGAAGGGACGCTGGTTCTGCCCGAACTGCCG-TGGCGACCGGCCGAACGTGATGAA 340
                     *   * *     **  * * *    ***   ** * * * **    *      *  *   

consensus_423#0      TCTTCTATTTTAATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGC 408
consensus_423#1      ACCGAAAGCACAATT--CCTCAAGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAG-AA 397
                      *    *    ****    ***   ** * **  * *   *      * **     *   

consensus_423#0      AATGCAAAATGGCGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAA 468
consensus_423#1      AACGTAGATTGACAAT---GGGCAGGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAA 454
                     ** * * * ** *  *     *  **   *         **  *  * * * ** *  **

consensus_423#0      TCACTGCAAACACAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTT 528
consensus_423#1      GCAC--CAGCCGCCAA--GTTTCCTCTCCCG--CCGACTGAC--GAATGTCGTTCGGCTC 506
                      ***  **  * * **  * ** *  *   *  *  *  ***  *** * *     *** 

consensus_423#0      CTTTGATAGGATTATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCC 588
consensus_423#1      AACAGAACATATTTTCATAAGCGTTA-GGCAACAGTTGTCTTGTTTCGTGTTTTTAAGCT 565
                         **    *** *    *** *    **    *** * *  ***  *** *** *** 

consensus_423#0      --ACCACGCAGTACCATTTAGTAGTGATGCAT--GCAAGCAAACGTGCCGCGCCCAAGAA 644
consensus_423#1      TAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGGCTCTCCAGCGTGGGACT-------- 617
                       * *      *  *****  ** * **   *  **   * * ****   *         

consensus_423#0      GGATAATAAAATCGAAAACACAGTACACTATATTTATGACCAGGGAATCC 694
consensus_423#1      --------------------------------------------------