These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAAACAGAAAACAGTGCGTCGCGGGCAGTGCACAACATTACCCAGACCCGGCAGTGTGTATCTTATCAATCAGCCTTCCAACACGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCACCCCCATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTCTTTTGCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGTGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAAGGATGAACCCGCGCATCGTCATCATCGGGGCCGGTGCGG] [+] EMBL BM618339 [CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAAACAGAAAACAGTGCGTCGCGGGCAGTGCACAACATTACCCAGACCCGGCAGTGTGTATCTTATCAATCAGCCTTCCAACACGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCACCCCCATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTCTTTTGCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGTGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAAGGATGAACCCGCGCATCGTCATCATCGGGGCCGGTGCGG] consensusID : consensus_4236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCGCAGTTCTAGCGAAATATCTTTGCCCAGGTCGACCCGGAGCTGTCGCCACAGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCCCGTATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCTAGATACACACACACACAGGCAGACACACACACCCTGGA] [+] EMBL BM632855 [CCGCAGTTCTAGCGAAATATCTTTGCCCAGGTCGACCCGGAGCTGTCGCCACAGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCCCGTATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCTAGATACACACACACACAGGCAGACACACACACCCTGGA] consensusID : consensus_4236#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACCCGGAGCTGTCGCCACGGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA] [+] EMBL BM590254 [CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACCCGGAGCTGTCGCCACGGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4236#1 ----------------CCGCAG-----TTCTAGCGA--AATATCTTTGCCCAGGTCGACC 37 consensus_4236#2 ----------------CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACC 44 consensus_4236#0 CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAA---ACA 57 * * *** * ** * * ** ** consensus_4236#1 CGGAGCTGT-CGCCACAGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATC 96 consensus_4236#2 CGGAGCTGT-CGCCACGGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATC 103 consensus_4236#0 GAAAACAGTGCGTCGCGGGCAGT----GCACAACATTACCCAGACCCGGCAGTGTGTATC 113 * * ** ** * * * * * * * *** * * *** consensus_4236#1 TTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCA 156 consensus_4236#2 TTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCA 163 consensus_4236#0 TTATCAAT----CAGCCTTCCAACAC-GTTGCACCATCGCTCCGTCACGAAGTGTCTCCA 168 *** * ** * * *** ********************************* consensus_4236#1 CGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCC 216 consensus_4236#2 CGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA---------- 213 consensus_4236#0 CGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCC 228 ************************************************** consensus_4236#1 ATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACA 276 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACA 288 consensus_4236#1 CCCCGTATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCT 336 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 CCACCCCCATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTC 348 consensus_4236#1 GCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTA 396 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 CTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGT 408 consensus_4236#1 TCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCC 456 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 TATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAAT 468 consensus_4236#1 CCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCG 516 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 CCCCTCTTTTGCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCT 528 consensus_4236#1 TAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGA 576 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 TGTGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCG 588 consensus_4236#1 TTTCTAGATACACACACACACAGGCAGACACACACACCCTGGA----------------- 619 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 GAACAAAAGGATTTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAA 648 consensus_4236#1 --------------------------------------- consensus_4236#2 --------------------------------------- consensus_4236#0 GGATGAACCCGCGCATCGTCATCATCGGGGCCGGTGCGG 687 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||