cluster # 4237

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Anopheles gambiae
cluster # 4237 cluster # 4237 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4237#0 length = 1075 sequences # 2

consensus_4237#1 length = 173 sequences # 1

consensusID : consensus_4237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1075
fasta sequence

                              [CGACCCACGCGTCCGCGATTACAAAACTTGCTCCTCCGTTGCACATCCATCCATTACGGTGAATAAATGTTGCGGCCAGGCAAATTTTGGCACGCCTTTGCCTCACACATCGTTCGAAGGTACCCGATGCGAGGTGGCCTTCGGTGTGCCTTCCTTTCGACTGCCAGCTCCGGTTCGTTCGACGTAATAGTGGTCGGTGGGGGCCATGCTGGGACGGAGGCGTGCAGTGCAGCCGCGCGGATGGGTGCCCGCACCCTGCTGGTGACGCAGAAACGGTCCACCATCGGGGAAATGTCGTGCAATCCGTCGTTCGGTGGCATCGGGAAGGGTCACCTTATTCGCGAGGTGGACGCACTGGACGGGGTGTGTGCGAGATGCTGCGATCGAAGCGGTGTCCAGTACAAGGTGTTGAATCGACGGAAAGGACCGGCCGTGTGGGGACCCCGAGCTCAGATCGACCGCAAACTGTACAAACGGGAGGTACAGCAGACGCTCGAAAACACGCCGAATCTGACGATCGTTGAAGCGTCGGTAGAGGACATTGTGCTGAGCGAGGACAGCGAGCAGCCCCGGTTGGCCGGTGTAAAGCTGGCCGATGGACGCACGATGACGGCGGACAGTCTCGTGATTACTACTGGCACGTTTCTGCGGGGACAGATCAACATCGGGCTGGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGACTGGCCAAAAGCATCGAAGAGCTCGGCTTCCGATTGGGTCGATTGAAGACTGGCACGCCGCCACGCATTCACCGTGATTCGATTCGATTCGAGCAGCTGGCCCGTCATCCGGGCGACGATCCTCCGGTGCCGTTTTCCTTCCTAAACGATCGCGTTTGGCTCGAGGCACACCAACAGCTGGACTGTTTTCTCACCCAAACCACAGCGCAGGTGAACGACATTGTGCTGCGCAATCTGCACTGCAATCGGCACGTGACCGAAGAGCTAACCGGACCCCGCTACTGTCCGTCGATCGAGTCGAAGATACTGCGCTTCGGGCACAAGCTGCACCAGATATGGCTGGAACCGGAGGGCTTTC]

[+] EMBL BM604380             [CGACCCACGCGTCCGCGATTACAAAACTTGCTCCTCCGTTGCACATCCATCCATTACGGTGAATAAATGTTGCGGCCAGGCAAATTTTGGCACGCCTTTGCCTCACACATCGTTCGAAGGTACCCGATGCGAGGTGGCCTTCGGTGTGCCTTCCTTTCGACTGCCAGCTCCGGTTCGTTCGACGTAATAGTGGTCGGTGGGGGCCATGCTGGGACGGAGGCGTGCAGTGCAGCCGCGCGGATGGGTGCCCGCACCCTGCTGGTGACGCAGAAACGGTCCACCATCGGGGAAATGTCGTGCAATCCGTCGTTCGGTGGCATCGGGAAGGGTCACCTTATTCGCGAGGTGGACGCACTGGACGGGGTGTGTGCGAGATGCTGCGATCGAAGCGGTGTCCAGTACAAGGTGTTGAATCGACGGAAAGGACCGGCCGTGTGGGGACCCCGAGCTCAGATCGACCGCAAACTGTACAAACGGGAGGTACAGCAGACGCTCGAAAACACGCCGAATCTGACGATCGTTGAAGCGTCGGTAGAGGACATTGTGCTGAGCGAGGACAGCGAGCAGCCCCGGTTGGCCGGTGTAAAGCTGGCCGATGGACGCACGATGACGGCGGACAGTCTCGTGATTACTACTGGCACGTTTCTGCGGGGACAGATCAACATCGGGCTGGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGACTGGC                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM599791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccGCTCAGATCGACCGCAAACTGTACAAACGGGAGGTACAGCAGACGCTCGAAAACACGCCGAATCTGACGATCGTTGAAGCGTCGGTAGAGGACATTGTGCTGAGCGAGGACAGCGAGCAGCCCCGGTTGGCCGGTGTAAAGCTGGCCGATGGACGCACGATGACGGCGGACAGTCTCGTGATTACTACTGGCACGTTTCTGCGGGGACAGATCAACATCGGGCTGGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGACTGGCCAAAAGCATCGAAGAGCTCGGCTTCCGATTGGGTCGATTGAAGACTGGCACGCCGCCACGCATTCACCGTGATTCGATTCGATTCGAGCAGCTGGCCCGTCATCCGGGCGACGATCCTCCGGTGCCGTTTTCCTTCCTAAACGATCGCGTTTGGCTCGAGGCACACCAACAGCTGGACTGTTTTCTCACCCAAACCACAGCGCAGGTGAACGACATTGTGCTGCGCAATCTGCACTGCAATCGGCACGTGACCGAAGAGCTAACCGGACCCCGCTACTGTCCGTCGATCGAGTCGAAGATACTGCGCTTCGGGCACAAGCTGCACCAGATATGGCTGGAACCGGAGGGCTTTC]




>consensus_4237#0
CGACCCACGCGTCCGCGATTACAAAACTTGCTCCTCCGTTGCACATCCATCCATTACGGT
GAATAAATGTTGCGGCCAGGCAAATTTTGGCACGCCTTTGCCTCACACATCGTTCGAAGG
TACCCGATGCGAGGTGGCCTTCGGTGTGCCTTCCTTTCGACTGCCAGCTCCGGTTCGTTC
GACGTAATAGTGGTCGGTGGGGGCCATGCTGGGACGGAGGCGTGCAGTGCAGCCGCGCGG
ATGGGTGCCCGCACCCTGCTGGTGACGCAGAAACGGTCCACCATCGGGGAAATGTCGTGC
AATCCGTCGTTCGGTGGCATCGGGAAGGGTCACCTTATTCGCGAGGTGGACGCACTGGAC
GGGGTGTGTGCGAGATGCTGCGATCGAAGCGGTGTCCAGTACAAGGTGTTGAATCGACGG
AAAGGACCGGCCGTGTGGGGACCCCGAGCTCAGATCGACCGCAAACTGTACAAACGGGAG
GTACAGCAGACGCTCGAAAACACGCCGAATCTGACGATCGTTGAAGCGTCGGTAGAGGAC
ATTGTGCTGAGCGAGGACAGCGAGCAGCCCCGGTTGGCCGGTGTAAAGCTGGCCGATGGA
CGCACGATGACGGCGGACAGTCTCGTGATTACTACTGGCACGTTTCTGCGGGGACAGATC
AACATCGGGCTGGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGACTG
GCCAAAAGCATCGAAGAGCTCGGCTTCCGATTGGGTCGATTGAAGACTGGCACGCCGCCA
CGCATTCACCGTGATTCGATTCGATTCGAGCAGCTGGCCCGTCATCCGGGCGACGATCCT
CCGGTGCCGTTTTCCTTCCTAAACGATCGCGTTTGGCTCGAGGCACACCAACAGCTGGAC
TGTTTTCTCACCCAAACCACAGCGCAGGTGAACGACATTGTGCTGCGCAATCTGCACTGC
AATCGGCACGTGACCGAAGAGCTAACCGGACCCCGCTACTGTCCGTCGATCGAGTCGAAG
ATACTGCGCTTCGGGCACAAGCTGCACCAGATATGGCTGGAACCGGAGGGCTTTC

consensusID : consensus_4237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [GATTGCCCCGAGGGTANTGATTACTACTGCACGTTCTGCGGGACAGATCACATCGGGCTGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGGGGCTGGCCAAAAGGCAATTCGAAGAGCTCGGCTTCCGGAATTGGGTCGATTGACAGGACTGGCACGCCG]

[+] EMBL AL930938             [GATTGCCCCGAGGGTANTGATTACTACTGCACGTTCTGCGGGACAGATCACATCGGGCTGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGGGGCTGGCCAAAAGGCAATTCGAAGAGCTCGGCTTCCGGAATTGGGTCGATTGACAGGACTGGCACGCCG]




>consensus_4237#1
GATTGCCCCGAGGGTANTGATTACTACTGCACGTTCTGCGGGACAGATCACATCGGGCTG
AAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGGGGCTGGCCAAAAGGCA
ATTCGAAGAGCTCGGCTTCCGGAATTGGGTCGATTGACAGGACTGGCACGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4237#0      CGACCCACGCGTCCGCGATTACAAAACTTGCTCCTCCGTTGCACATCCATCCATTACGGT 60
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      GAATAAATGTTGCGGCCAGGCAAATTTTGGCACGCCTTTGCCTCACACATCGTTCGAAGG 120
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      TACCCGATGCGAGGTGGCCTTCGGTGTGCCTTCCTTTCGACTGCCAGCTCCGGTTCGTTC 180
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      GACGTAATAGTGGTCGGTGGGGGCCATGCTGGGACGGAGGCGTGCAGTGCAGCCGCGCGG 240
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      ATGGGTGCCCGCACCCTGCTGGTGACGCAGAAACGGTCCACCATCGGGGAAATGTCGTGC 300
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      AATCCGTCGTTCGGTGGCATCGGGAAGGGTCACCTTATTCGCGAGGTGGACGCACTGGAC 360
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      GGGGTGTGTGCGAGATGCTGCGATCGAAGCGGTGTCCAGTACAAGGTGTTGAATCGACGG 420
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      AAAGGACCGGCCGTGTGGGGACCCCGAGCTCAGATCGACCGCAAACTGTACAAACGGGAG 480
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      GTACAGCAGACGCTCGAAAACACGCCGAATCTGACGATCGTTGAAGCGTCGGTAGAGGAC 540
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      ATTGTGCTGAGCGAGGACAGCGAGCAGCCCCGGTTGGCCGGTGTAAAGCTGGCCGATGGA 600
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      CGCACGATGACGGCGGACAGTCTCGTGATTACTACTGGCACGTTTCTGCGGGGACAGATC 660
consensus_4237#1      --------GATTGCCCCGAGGGTANTGATTACTACTG-CACGTT-CTGCGGG-ACAGATC 49
                              **  **    **  *  ************ ****** ******* *******

consensus_4237#0      AACATCGGGCTGGAAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGA--C 718
consensus_4237#1      A-CATCGGGCTG-AAACGCGCCCGGCAGGAAGAATCGGAGACGAACCGGCGATCGGGGGC 107
                      * ********** *******************************************   *

consensus_4237#0      TGGCCAAAAG-CA--TCGAAGAGCTCGGCTTCCG--ATTGGGTCGATTGA--AGACTGGC 771
consensus_4237#1      TGGCCAAAAGGCAATTCGAAGAGCTCGGCTTCCGGAATTGGGTCGATTGACAGGACTGGC 167
                      ********** **  *******************  **************   *******

consensus_4237#0      ACGCCGCCACGCATTCACCGTGATTCGATTCGATTCGAGCAGCTGGCCCGTCATCCGGGC 831
consensus_4237#1      ACGCCG------------------------------------------------------ 173
                      ******                                                      

consensus_4237#0      GACGATCCTCCGGTGCCGTTTTCCTTCCTAAACGATCGCGTTTGGCTCGAGGCACACCAA 891
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      CAGCTGGACTGTTTTCTCACCCAAACCACAGCGCAGGTGAACGACATTGTGCTGCGCAAT 951
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      CTGCACTGCAATCGGCACGTGACCGAAGAGCTAACCGGACCCCGCTACTGTCCGTCGATC 1011
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      GAGTCGAAGATACTGCGCTTCGGGCACAAGCTGCACCAGATATGGCTGGAACCGGAGGGC 1071
consensus_4237#1      ------------------------------------------------------------
                                                                                  

consensus_4237#0      TTTC 1075
consensus_4237#1      ----