These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGTGCCGATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAAGAAAGAAGCAGCAGCAGCCAGGCCCATTCGAACGCCGCGCGGTGTGTGTGCGTCGAAGGCGCGCGCGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAATCTACATCTCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCGTGTGTGTGTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGATAATCAGCCTACAGACACATCCCCACTCACACACAGCATACAGCAAAAGCACACACATCCTGAAGAGGTGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGATGTGTAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAGCCTGGGGCTGATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG] [+] EMBL BX469597 [ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGTGCCGATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAAGAAAGAAGCAGCAGCAGCCAGGCCCATTCGAACGCCGCGCGGTGTGTGTGCGTCGAAGGCGCGCGCGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAATCTACATCTCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCGTGTGTGTGTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGATAATCAGCCTACAGACACATCCCCACTCACACACAGCATACAGCAAAAGCACACACATCCTGAAGAGGTGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGATGTGTAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAGCCTGGGGCTGATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG] consensusID : consensus_4244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCGGACGCGTGGGGCCGAAGAGTGGCAACATCTAAGTTAAGGAAAGTGACTCGTACAGGCGCGCAAGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCTTGTTTGCACACCCACATACACACCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCAGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATAGACACTGAAGCAAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGCGACGACGGCAACGCAACAACAACAACAAC] [+] EMBL BM656440 [CCGCGGACGCGTGGGGCCGAAGAGTGGCAACATCTAAGTTAAGGAAAGTGACTCGTACAGGCGCGCAAGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCTTGTTTGCACACCCACATACACACCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCAGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATAGACACTGAAGCAAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGCGACGACGGCAACGCAACAACAACAACAAC] consensusID : consensus_4244#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAAAACGGTGAACGCTGGTTCTTGGAAAAAATATCTCGCGTTTTATTTTTTGTTGGTTGCTTTCGAGTGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCGCTTGTTTGCACACCCACATACACGTCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCGGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCT] [+] EMBL BM587685 [CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAAAACGGTGAACGCTGGTTCTTGGAAAAAATATCTCGCGTTTTATTTTTTGTTGGTTGCTTTCGAGTGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCGCTTGTTTGCACACCCACATACACGTCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCGGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4244#1 -----------------------------------------CCGCGGACGCGTGGGGCCG 19 consensus_4244#2 -------------CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAA 47 consensus_4244#0 ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCA 60 * * consensus_4244#1 AAGAGTGGCAACATCTAAG-TTAAGGAAAGTGAC-TCG------------TACAGGC--- 62 consensus_4244#2 AACGGTGAACGCTGGTTC--TTGGAAAAAATATC-TCGCGTTTTATTTTTTGTTGGTTGC 104 consensus_4244#0 CACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGT--- 117 * ** * * * *** * ** consensus_4244#1 --GCGCAAGGAATATTCCCCCATACCA-CGAACCCAAAAGGAGGGGGGCTTATACACATA 119 consensus_4244#2 TTTCGAGTGGAATATTCCCCCATACCA-CGAACCCAAAAGGAGGGGGGCTTATACACATA 163 consensus_4244#0 --GCCGATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAA 175 * * * * * * * ** ** * * * ** * * * * * * * consensus_4244#1 GTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAA 179 consensus_4244#2 GTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAA 223 consensus_4244#0 GAAAGAAGCAGCAGCAGCCAGGCCCATTCG-AACGCCGCGCGGTGTGTGTG-CGTCGAAG 233 * * * * *** * * * ** * ** * ** * consensus_4244#1 AAGCGGCAGCAGTTGCA-GCAATAATTTCAAAACAAAAACAACA-GAAAAGGGGGAAAAA 237 consensus_4244#2 AAGCGGCAGCAGTTGCA-GCAATAATTTCAAAACAAAAACAACA-GAAAAGGGGGAAAAA 281 consensus_4244#0 GCGCGCGCGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAAT 293 *** ** * * ** * * * * * * ** **** consensus_4244#1 AAA-CGCTACTTGGGAGAAAATAACGCGCGC--TTGTTTGCACACCCACATACA-CACCG 293 consensus_4244#2 AAAACGCTACTTGGGAGAAAATAACGCGCGCGCTTGTTTGCACACCCACATACA-CGTCG 340 consensus_4244#0 CTACATCTCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCG 353 * ** * * *** ** * ** ** * * * * ** ** consensus_4244#1 AAACCAGTCGAGT-CGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAAT 352 consensus_4244#2 AAACCAGTCGAGT-CGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAAT 399 consensus_4244#0 TGTGTGTGTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGAT 413 * ** * **** * * * * * * * ** * ** consensus_4244#1 GTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAG 412 consensus_4244#2 GTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCA---AGGGCGAAAGCGCATCAG 456 consensus_4244#0 AATCAGCCTACAGACACATCCCCACTCACA--CACAGCATACAGCAAAAGCACACACATC 471 * *** * ** * * ** ***** ** * * ** consensus_4244#1 CAGCAGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGT 472 consensus_4244#2 CAGCGGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGT 516 consensus_4244#0 CTGAAGAGGTGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTA 531 * * * ***** ** ** * * *** * * *** consensus_4244#1 GCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATA 532 consensus_4244#2 GCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCT------- 569 consensus_4244#0 GTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTG-TGTAGTGAAAGCGTGC 590 * * ****** * ** * * * * * * ** *** ** consensus_4244#1 GACACTGAAGCAAACGAGGACGGCATGCCCACGCACACACAAGCA-CACAGTAGCAGCAG 591 consensus_4244#2 ------------------------------------------------------------ consensus_4244#0 GGCAGATGTGTAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAG 650 consensus_4244#1 GCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGC 651 consensus_4244#2 ------------------------------------------------------------ consensus_4244#0 CCTGGGGCTGATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG----- 705 consensus_4244#1 GACGACGGCAACGCAACAACAACAACAAC 680 consensus_4244#2 ----------------------------- consensus_4244#0 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||