These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAAGCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACGCAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTGCCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTACAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAGCCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACGCCGN] [+] EMBL AL930956 [AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAAGCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACGCAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTGCCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTACAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAGCCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACGCCGN] consensusID : consensus_4250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence [TGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGTGATTTACCTTCAAATAATACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTATTTTATAAAGCTGTACATATTTAAATCCCTTTTTGAAAGATGAATATCGGAGAGAGGAACCAGGGACATGTAGATTACGGATGAGGGCGGGGTGCAGGGTGCGAGCTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAAGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACAAACATTAGACT] [+] EMBL BX621362 [TGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGTGATTTACCTTCAAATAATACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTATTTTATAAAGCTGTACATATTTAAATCCCTTTTTGAAAGATGAATATCGGAGAGAGGAACCAGGGACATGTAGATTACGGATGAGGGCGGGGTGCAGGGTGCGAGCTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAAGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAA ] [+] EMBL BM592009 [ ccgGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAAGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACAAACATTAGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4250#0 AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACC 60 consensus_4250#1 ---------------------------TGAAGCCATTTTTCTCAGGTTTCATTAATTACC 33 ********************************* consensus_4250#0 TTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAA 120 consensus_4250#1 TTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAA 93 ************************************************************ consensus_4250#0 CTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTT 180 consensus_4250#1 CTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTT 153 ************************************************************ consensus_4250#0 TCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTG 240 consensus_4250#1 TCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTG 213 ************************************************************ consensus_4250#0 CATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAAC 300 consensus_4250#1 CATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCG-TAAAGCATGTAGTAGGCCAAAC 272 ************************************* ********************** consensus_4250#0 GAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGT 360 consensus_4250#1 GAGAAACGACTAGCGCAAATTTAACTCTGCG-TGA-TTTACCTTCAAATAA-TACTGTGT 329 ******************************* *** *************** ******** consensus_4250#0 TCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAA 420 consensus_4250#1 TCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTATTTT--ATAAA- 386 ************************************************ *** ***** consensus_4250#0 GCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACG 480 consensus_4250#1 ---GCTGTACATATTTAAATCCCTTTTT----GAAAGATGAA-------TATCG-----G 427 *** * *** *** ** ** ** * * * * ***** * consensus_4250#0 CAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTG 540 consensus_4250#1 AGAGAGGAACCAGGGACA-TGTAG--ATTACGGA-TGAGGGCGGGGTGCAG-GGTGCGAG 482 ************* ***** ** ***** **** *** ** ** * * ** * consensus_4250#0 CCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTA 600 consensus_4250#1 CTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAAC 542 * * * * ** * * * * * * * * **** * consensus_4250#0 CAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAG 660 consensus_4250#1 CAAGAGA-GCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAA 601 ** * * ** ** ** * ** ***** * ** * * * * ** consensus_4250#0 CCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACG 720 consensus_4250#1 GT-AAAACGT-GTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACA 659 * ** * * * **** * * * ** ** * * ** consensus_4250#0 CCGN------- 724 consensus_4250#1 AACATTAGACT 670 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||