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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence
[GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGTTACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCC-AAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCAGCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGCATG]
[+] EMBL BX617880 [GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGTTACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCC AAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCAGC ]
[+] EMBL BX621970 [ AACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGGCGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCCAAAAAGTGAAGCCAAAAGATTTAAAAAGCACACATGTGCGGCCATGATGGCCCCAGCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGCATG]
consensusID : consensus_4251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGACGGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCGGGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACGAAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAGCCGAAAGGATTAACACGCACACAT]
[+] EMBL BX468698 [GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGACGGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCGGGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACGAAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAGCCGAAAGGATTAACACGCACACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4251#0 GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGT 60
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 TACTGACTGGTGAAAGTATACCGAGCGATAGAACAA-ACACAAACGTCTATTTGG-ACGT 118
consensus_4251#1 -----------------GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGT 43
* ** * ** * * * * ** ** **
consensus_4251#0 CGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCG-GTGCGCGATGTACTT 177
consensus_4251#1 AAATTAGTATTAC-TGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCC 102
* * * ** *** ** ** **** * * * * * * *
consensus_4251#0 ACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACT 237
consensus_4251#1 ACCCGACGGTACCAGGACGGAG-CAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACC 161
*** ** ** * * ** ** * * * * * ** * * * * * **** ***
consensus_4251#0 GTATAACCCAAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCC 297
consensus_4251#1 CTTGCACCCG----TGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCG 217
* **** ** * * * * * *** *** * ** *
consensus_4251#0 CCAGCGAATTAGGAAA-GTAGTGT-ATGATAGGGTACAATTGAAATGAGA--AAACTCGT 353
consensus_4251#1 CAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTT 277
* * ** *** * *** *** * * * *** * ** ** * * *
consensus_4251#0 TAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTAC-CGTACCGGGAAATATGGAAA 412
consensus_4251#1 CACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGT-CGCCGG 336
* *** * ******* ** ** ** * *** * *
consensus_4251#0 ACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGG 472
consensus_4251#1 ACCGCCGGATCAAGCGGCGAAC----CGGGGGACCGGGAAGG--ATCGCGAAAGNCCCCG 390
*** ** *** * * ** * * *** **** * * ** ** * * *
consensus_4251#0 GATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCA 532
consensus_4251#1 GTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGG 450
* * ** ** * * * * * * * *
consensus_4251#0 GCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATC 592
consensus_4251#1 ACGTCGAAGGGGCACCGTGTGCT-----ATATGTATCCTAGGACGAGCAATCCGGTGCGC 505
* * * * ** ** * * * * *** **** * * * *
consensus_4251#0 GTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAA 652
consensus_4251#1 G---ATGTACTTACCGGGATGGGAG-GGAGGCGTAGACGAAACAGATGTATCGGCGATGA 561
* **** ** * * * * *** ** **** **** * *** *
consensus_4251#0 AATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTA 712
consensus_4251#1 ------TTGATGGTACGCAACACTGGTATAAC----CCAGAG----AGTGAAGCCGAAAG 607
* * ** * ** *** * ** * **** * *
consensus_4251#0 GTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGA 772
consensus_4251#1 GATTAACACGCACACAT------------------------------------------- 624
* * * ** * * *
consensus_4251#0 AATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACAT 832
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 CTACATGCATG 843
consensus_4251#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||