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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence
[ACGGAAATCTATCGCAACATTTCGCTCGCCCGGGGGGGGGGCCATGTTCTGCTCGGTGGTGCTGATAGTCAATCTGCAAATCTGTTTCTGGATATTCGTTTGTGTGCTACTTACGCTCGTCAACGTTGGCGGGCTGATGCAGGTCTGGGGACTGACGCTCGATCTCGTGTCCTGCATTGCGCTGCAGCTTGCCGTCGGGCTGTGCGTTGACTATGCGGCCCACATTGGCCACACGTTCCTCACGATCAACAAGGGCGATCGGAATCGGCGCAGTCTCGAGACGGTGCTACACATCGGGGCGGCCGTTTTCTACGGCGGCGGATCCACGATACTGTCCCTTTCGATACTGTCCGGCTCGCAGGCGTATACTTACAGGACGTTTTTCAAAATATTCCTTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGTTCGGGCCCGGCCCCGTACAGCGGATCGCTGATTTTAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGGAGAAAGCTGGAGAAGTAAGATTAACGCGCGCAGACATTAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGCTTAGGAGGAGGTGTGTTTAAGTGTGCTCTGCCTCAAGCACAATATTGCCTGATAACTTTAATTGTGATCGATCATGTTCTCTTTCCTTACGCATGATTTTTAAGAGGGCCCCCCGGCTGCAATTTGTAC]
[+] EMBL CNS08ZQY [ACGGAAATCTATCGCAACATTTCGCTCGCCCGGGGGGGGGGCCATGTTCTGCTCGGTGGTGCTGATAGTCAATCTGCAAATCTGTTTCTGGATATTCGTTTGTGTGCTACTTACGCTCGTCAACGTTGGCGGGCTGATGCAGGTCTGGGGACTGACGCTCGATCTCGTGTCCTGCATTGCGCTGCAGCTTGCCGTCGGGCTGTGCGTTGACTATGCGGCCCACATTGGCCACACGTTCCTCACGATCAACAAGGGCGATCGGAATCGGCGCAGTCTCGAGACGGTGCTACACATCGGGGCGGCCGTTTTCTACGGCGGCGGATCCACGATACTGTCCCTTTCGATACTGTCCGGCTCGCAGGCGTATACTTACAGGACGTTTTTCAAAATATTCCTTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGTTCGGGCCCGGCCCCGTACAGCGGATCGCTGATTTTAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGGAGAAAGCTGGAGAAGTAAGATTAACGCGCGCAGACATTAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGCTTAGGAGGAGGTGTGTTTAAGTGTGCTCT ]
[-] EMBL CNS08ZQZ [ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAAAGCTTAGCAGCAGTAGTGTTTAAGTGTCCTCTGCCTCAAGCACAATATTGCCTGATAACTTTAATTGTGATCGATCATGTTCTCTTTCCTTACGCATGATTTTTAAGAGGGCCCCCCGGCTGCAATTTGTAC]
consensusID : consensus_4252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[TTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGATCGGGCCGGCCCCGTACAGCGGATCGCTGAACAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGAAGAGGGCTGGAGAAGTAAGATCAACGTGCGCAGACATTAGGAATAAGAGAGAGAGAGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTAGCAGCAGTAGTGTTTAAGTGTCCCCTGCCTCAAGCACAATATTGCCTGATAATTTTAATTGTGATCGATCATGTTCTCTTTCCTTACACATGATTTGTAAGAAGTATTTTTTTACTACAATTTGTACATATAATTGATAAGCAATAGAAAGAAGTTAAGGACGAGTAGATAGAGAGAGAATCGAAACGATTTAAAACAA]
[+] EMBL BX616744 [TTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGATCGGGCCGGCCCCGTACAGCGGATCGCTGAACAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGAAGAGGGCTGGAGAAGTAAGATCAACGTGCGCAGACATTAGGAATAAGAGAGAGAGAGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTAGCAGCAGTAGTGTTTAAGTGTCCCCTGCCTCAAGCACAATATTGCCTGATAATTTTAATTGTGATCGATCATGTTCTCTTTCCTTACACATGATTTGTAAGAAGTATTTTTTTACTACAATTTGTACATATAATTGATAAGCAATAGAAAGAAGTTAAGGACGAGTAGATAGAGAGAGAATCGAAACGATTTAAAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4252#0 ACGGAAATCTATCGCAACATTTCGCTCGCCCGGGGGGGGGGCCATGTTCTGCTCGGTGGT 60
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GCTGATAGTCAATCTGCAAATCTGTTTCTGGATATTCGTTTGTGTGCTACTTACGCTCGT 120
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 CAACGTTGGCGGGCTGATGCAGGTCTGGGGACTGACGCTCGATCTCGTGTCCTGCATTGC 180
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GCTGCAGCTTGCCGTCGGGCTGTGCGTTGACTATGCGGCCCACATTGGCCACACGTTCCT 240
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 CACGATCAACAAGGGCGATCGGAATCGGCGCAGTCTCGAGACGGTGCTACACATCGGGGC 300
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GGCCGTTTTCTACGGCGGCGGATCCACGATACTGTCCCTTTCGATACTGTCCGGCTCGCA 360
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GGCGTATACTTACAGGACGTTTTTCAAAATATTCCTTCTCGTGATTGCGTACGGACTGTT 420
consensus_4252#1 -----------------------------------TTCTCGTGATTGCGTACGGACTGTT 25
*************************
consensus_4252#0 CCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGTTCGGGCCCGGCCCCGTACAGCG 480
consensus_4252#1 CCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGATCGGGCC-GGCCCCGTACAGCG 84
************************************* ******* **************
consensus_4252#0 GATCGCTGATTTTAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTG 540
consensus_4252#1 GATCGCTGAA--CAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTG 142
********* ***********************************************
consensus_4252#0 CCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTAC 600
consensus_4252#1 CCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTAC 202
************************************************************
consensus_4252#0 GGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACC 660
consensus_4252#1 GGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACC 262
************************************************************
consensus_4252#0 GTCCGTGGGAGAAAGCTGGAGAAGTAAGATTAACGCGCGCAGACATTAGGAATAAGAGAG 720
consensus_4252#1 GTCCGTGGAAGAGGGCTGGAGAAGTAAGATCAACGTGCGCAGACATTAGGAATAAGAGAG 322
******** *** **************** **** ************************
consensus_4252#0 AGAGAG------------------------------AGAGAGAGAGAGAGAGAGAGAGAG 750
consensus_4252#1 AGAGAGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAG 382
****** ******* ****************
consensus_4252#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGCTTAGGAGGAGGTGTGTT 810
consensus_4252#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTAGCAGCAGTAGTGTT 442
************************************* ********* ** ** *****
consensus_4252#0 TAAGTGTGCTCTGCCTCAAGCACAATATTGCCTGATAACTTTAATTGTGATCGATCATGT 870
consensus_4252#1 TAAGTGTCCCCTGCCTCAAGCACAATATTGCCTGATAATTTTAATTGTGATCGATCATGT 502
******* * **************************** *********************
consensus_4252#0 TCTCTTTCCTTACGCATGATTTTTAAGAGG-GCCCCCCGGCTGCAATTTGTAC------- 922
consensus_4252#1 TCTCTTTCCTTACACATGATTTGTAAGAAGTATTTTTTTACTACAATTTGTACATATAAT 562
************* ******** ***** * ** **********
consensus_4252#0 ------------------------------------------------------------
consensus_4252#1 TGATAAGCAATAGAAAGAAGTTAAGGACGAGTAGATAGAGAGAGAATCGAAACGATTTAA 622
consensus_4252#0 -----
consensus_4252#1 AACAA 627
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||