These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence [ACGGAAATCTATCGCAACATTTCGCTCGCCCGGGGGGGGGGCCATGTTCTGCTCGGTGGTGCTGATAGTCAATCTGCAAATCTGTTTCTGGATATTCGTTTGTGTGCTACTTACGCTCGTCAACGTTGGCGGGCTGATGCAGGTCTGGGGACTGACGCTCGATCTCGTGTCCTGCATTGCGCTGCAGCTTGCCGTCGGGCTGTGCGTTGACTATGCGGCCCACATTGGCCACACGTTCCTCACGATCAACAAGGGCGATCGGAATCGGCGCAGTCTCGAGACGGTGCTACACATCGGGGCGGCCGTTTTCTACGGCGGCGGATCCACGATACTGTCCCTTTCGATACTGTCCGGCTCGCAGGCGTATACTTACAGGACGTTTTTCAAAATATTCCTTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGTTCGGGCCCGGCCCCGTACAGCGGATCGCTGATTTTAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGGAGAAAGCTGGAGAAGTAAGATTAACGCGCGCAGACATTAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGCTTAGGAGGAGGTGTGTTTAAGTGTGCTCTGCCTCAAGCACAATATTGCCTGATAACTTTAATTGTGATCGATCATGTTCTCTTTCCTTACGCATGATTTTTAAGAGGGCCCCCCGGCTGCAATTTGTAC] [+] EMBL CNS08ZQY [ACGGAAATCTATCGCAACATTTCGCTCGCCCGGGGGGGGGGCCATGTTCTGCTCGGTGGTGCTGATAGTCAATCTGCAAATCTGTTTCTGGATATTCGTTTGTGTGCTACTTACGCTCGTCAACGTTGGCGGGCTGATGCAGGTCTGGGGACTGACGCTCGATCTCGTGTCCTGCATTGCGCTGCAGCTTGCCGTCGGGCTGTGCGTTGACTATGCGGCCCACATTGGCCACACGTTCCTCACGATCAACAAGGGCGATCGGAATCGGCGCAGTCTCGAGACGGTGCTACACATCGGGGCGGCCGTTTTCTACGGCGGCGGATCCACGATACTGTCCCTTTCGATACTGTCCGGCTCGCAGGCGTATACTTACAGGACGTTTTTCAAAATATTCCTTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGTTCGGGCCCGGCCCCGTACAGCGGATCGCTGATTTTAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGGAGAAAGCTGGAGAAGTAAGATTAACGCGCGCAGACATTAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGCTTAGGAGGAGGTGTGTTTAAGTGTGCTCT ] [-] EMBL CNS08ZQZ [ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAAAGCTTAGCAGCAGTAGTGTTTAAGTGTCCTCTGCCTCAAGCACAATATTGCCTGATAACTTTAATTGTGATCGATCATGTTCTCTTTCCTTACGCATGATTTTTAAGAGGGCCCCCCGGCTGCAATTTGTAC] consensusID : consensus_4252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [TTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGATCGGGCCGGCCCCGTACAGCGGATCGCTGAACAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGAAGAGGGCTGGAGAAGTAAGATCAACGTGCGCAGACATTAGGAATAAGAGAGAGAGAGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTAGCAGCAGTAGTGTTTAAGTGTCCCCTGCCTCAAGCACAATATTGCCTGATAATTTTAATTGTGATCGATCATGTTCTCTTTCCTTACACATGATTTGTAAGAAGTATTTTTTTACTACAATTTGTACATATAATTGATAAGCAATAGAAAGAAGTTAAGGACGAGTAGATAGAGAGAGAATCGAAACGATTTAAAACAA] [+] EMBL BX616744 [TTCTCGTGATTGCGTACGGACTGTTCCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGATCGGGCCGGCCCCGTACAGCGGATCGCTGAACAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTGCCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTACGGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACCGTCCGTGGAAGAGGGCTGGAGAAGTAAGATCAACGTGCGCAGACATTAGGAATAAGAGAGAGAGAGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTAGCAGCAGTAGTGTTTAAGTGTCCCCTGCCTCAAGCACAATATTGCCTGATAATTTTAATTGTGATCGATCATGTTCTCTTTCCTTACACATGATTTGTAAGAAGTATTTTTTTACTACAATTTGTACATATAATTGATAAGCAATAGAAAGAAGTTAAGGACGAGTAGATAGAGAGAGAATCGAAACGATTTAAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4252#0 ACGGAAATCTATCGCAACATTTCGCTCGCCCGGGGGGGGGGCCATGTTCTGCTCGGTGGT 60 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GCTGATAGTCAATCTGCAAATCTGTTTCTGGATATTCGTTTGTGTGCTACTTACGCTCGT 120 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 CAACGTTGGCGGGCTGATGCAGGTCTGGGGACTGACGCTCGATCTCGTGTCCTGCATTGC 180 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GCTGCAGCTTGCCGTCGGGCTGTGCGTTGACTATGCGGCCCACATTGGCCACACGTTCCT 240 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 CACGATCAACAAGGGCGATCGGAATCGGCGCAGTCTCGAGACGGTGCTACACATCGGGGC 300 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GGCCGTTTTCTACGGCGGCGGATCCACGATACTGTCCCTTTCGATACTGTCCGGCTCGCA 360 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GGCGTATACTTACAGGACGTTTTTCAAAATATTCCTTCTCGTGATTGCGTACGGACTGTT 420 consensus_4252#1 -----------------------------------TTCTCGTGATTGCGTACGGACTGTT 25 ************************* consensus_4252#0 CCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGTTCGGGCCCGGCCCCGTACAGCG 480 consensus_4252#1 CCACGGCACGATACTGCTGCCAGTCATACTGAGCCTGATCGGGCC-GGCCCCGTACAGCG 84 ************************************* ******* ************** consensus_4252#0 GATCGCTGATTTTAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTG 540 consensus_4252#1 GATCGCTGAA--CAGTCTAAACACGATCAACAACAATCCCAGTCCAACGAAGAAAGTGTG 142 ********* *********************************************** consensus_4252#0 CCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTAC 600 consensus_4252#1 CCGCGAGGGCACGGAAATGATTTCCTTCATTGGCAAGGAAAAGTATACCCCGAACGGTAC 202 ************************************************************ consensus_4252#0 GGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACC 660 consensus_4252#1 GGAACTGTAGGGATGTGTCGGCGAGGGAAGCGGAATTTAAAGCACACACGCACTTACACC 262 ************************************************************ consensus_4252#0 GTCCGTGGGAGAAAGCTGGAGAAGTAAGATTAACGCGCGCAGACATTAGGAATAAGAGAG 720 consensus_4252#1 GTCCGTGGAAGAGGGCTGGAGAAGTAAGATCAACGTGCGCAGACATTAGGAATAAGAGAG 322 ******** *** **************** **** ************************ consensus_4252#0 AGAGAG------------------------------AGAGAGAGAGAGAGAGAGAGAGAG 750 consensus_4252#1 AGAGAGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAG 382 ****** ******* **************** consensus_4252#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGCTTAGGAGGAGGTGTGTT 810 consensus_4252#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTAGCAGCAGTAGTGTT 442 ************************************* ********* ** ** ***** consensus_4252#0 TAAGTGTGCTCTGCCTCAAGCACAATATTGCCTGATAACTTTAATTGTGATCGATCATGT 870 consensus_4252#1 TAAGTGTCCCCTGCCTCAAGCACAATATTGCCTGATAATTTTAATTGTGATCGATCATGT 502 ******* * **************************** ********************* consensus_4252#0 TCTCTTTCCTTACGCATGATTTTTAAGAGG-GCCCCCCGGCTGCAATTTGTAC------- 922 consensus_4252#1 TCTCTTTCCTTACACATGATTTGTAAGAAGTATTTTTTTACTACAATTTGTACATATAAT 562 ************* ******** ***** * ** ********** consensus_4252#0 ------------------------------------------------------------ consensus_4252#1 TGATAAGCAATAGAAAGAAGTTAAGGACGAGTAGATAGAGAGAGAATCGAAACGATTTAA 622 consensus_4252#0 ----- consensus_4252#1 AACAA 627 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||