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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTGAAAAGACCCTACAGAAACTGGTATCACTGACGCTCTGGCAAAGTACGTGAACGAGTTTGCCACCATGAGCGAGGAAAATGTGTTGGACAAGATGAAAAACAGTCCGGAATTTGTGCAGTGTGCGTCATGGAGCGAAATTCTCGACTCGGTCGGGTTTCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATTGCTCACACGGAGCAGTTTCCCAAACCGGAAAATGCAAACGGTGTTGATTTTCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTTATGAATCAAAGTACTCAGGATGCCCTGAAGAAGGTGTATGAGGAAACAGTGTTGCAAACGTCCAGGGCGGATCAAAAGGAAGAGATAGCCATACTACACGAGACACTGAAAACGATGCGCAATCCGGTACAGTCTAATGAACAGAATAGAATTGTGGACGACTTGAGGCGGTTGTTTGCCGACCCCAACATAAACCCTTTCCGCCTTCCGATTAATCAGATATGTTCGAATAACCCGTAAGCATAAAGAATAACACGCTGGTAGAACTTTTTCGGAAATAAACATGCA]
[+] EMBL BX609295 [CCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTGAAAAGACCCTACAGAAACTGGTATCACTGACGCTCTGGCAAAGTACGTGAACGAGTTTGCCACCATGAGCGAGGAAAATGTGTTGGACAAGATGAAAAACAGTCCGGAATTTGTGCAGTGTGCGTCATGGAGCGAAATTCTCGACTCGGTCGGGTTTCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATTGCTCACACGGAGCAGTTTCCCAAACCGGAAAATGCAAACGGTGTTGATTTTCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTTATGAATCAAAGTACTCAGGATGCCCTGAAGAAGGTGTATGAGGAAACAGTGTTGCAAACGTCCAGGGCGGATCAAAAGGAAGAGATAGCCATACTACACGAGACACTGAAAACGATGCGCAATCCGGTACAGTCTAATGAACAGAATAGAATTGTGGACGACTTGAGGCGGTTGTTTGCCGACCCCAACATAAACCCTTTCCGCCTTCCGATTAATCAGATATGTTCGAATAACCCGTAAGCATAAAGAATAACACGCTGGTAGAACTTTTTCGGAAATAAACATGCA]
consensusID : consensus_4273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CAGAATCGGCACGAGGNNATTTCGGGATGGATGCGCCAGCCAGCACAGAATCTCGACCAAAAAAACGCCCCAAAGCATCGAAAAAGCCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTTGAAAAGACCCTACAGAAACTGGGTATCACCGGGACGCTCTGGGCAAGTACGTGAAACGAGTTTGCCACCATNAGGCGAGGAAAATGTGTTGGGACAAGGATGAAAAACAGTCCGGGAATTTGTGCAAGTGTGCGGTCATGGGAGCGGAAATTCTTCGGACTCGGGTCGGGGTTTCCGCCGAAGAACGTGCAACAACGAGCTTACCGGCGTGGCGCTTNNAAGATCATTGGTTCACAACGGGAAGCAAGTTTTCCCAAAACCCGGGAAAATGCNCAAACCGGGTGTTGATTTTCAGCTGGCNTTGTATCTNGAAACCCTGGGCCAGGCGAGTGATTGAATTGGTGCAAACCGGAGTACGGGGTTATGGAACTCAACTGTAACTCAGGAGTGNCCCTNGAAGAACGGTGGTATGAGGAAACAGTGTTTGCCAAACAGT]
[+] EMBL BX468750 [CAGAATCGGCACGAGGNNATTTCGGGATGGATGCGCCAGCCAGCACAGAATCTCGACCAAAAAAACGCCCCAAAGCATCGAAAAAGCCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTTGAAAAGACCCTACAGAAACTGGGTATCACCGGGACGCTCTGGGCAAGTACGTGAAACGAGTTTGCCACCATNAGGCGAGGAAAATGTGTTGGGACAAGGATGAAAAACAGTCCGGGAATTTGTGCAAGTGTGCGGTCATGGGAGCGGAAATTCTTCGGACTCGGGTCGGGGTTTCCGCCGAAGAACGTGCAACAACGAGCTTACCGGCGTGGCGCTTNNAAGATCATTGGTTCACAACGGGAAGCAAGTTTTCCCAAAACCCGGGAAAATGCNCAAACCGGGTGTTGATTTTCAGCTGGCNTTGTATCTNGAAACCCTGGGCCAGGCGAGTGATTGAATTGGTGCAAACCGGAGTACGGGGTTATGGAACTCAACTGTAACTCAGGAGTGNCCCTNGAAGAACGGTGGTATGAGGAAACAGTGTTTGCCAAACAGT]
consensusID : consensus_4273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[CGTGAACGAGTGCGCCACCATGAGCGAGGAAAATGTGTGGGACAAGATGAAAAACAGTCCGGAATAAGTGCAGTGTGCGTCAGGGAGCGAAATACTCGACACGGTCGGGTGCCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATAGCTCACACGGAGCAGTACCCCAAACCGGAAAATGCAAACGGTGTGGAAACGCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTGATGAAACAAAGTACTCAGGAA]
[+] EMBL BX608166 [CGTGAACGAGTGCGCCACCATGAGCGAGGAAAATGTGTGGGACAAGATGAAAAACAGTCCGGAATAAGTGCAGTGTGCGTCAGGGAGCGAAATACTCGACACGGTCGGGTGCCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATAGCTCACACGGAGCAGTACCCCAAACCGGAAAATGCAAACGGTGTGGAAACGCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTGATGAAACAAAGTACTCAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4273#0 ------------------------------------------------------------
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 CAGAATCGGCACGAGGNNATTTCGGGATGGATGCGCCAGCCAGCACAGAATCTCGACCAA 60
consensus_4273#0 --------------------------CCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAG 34
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 AAAAACGCCCCAAAGCATCGAAAAAGCCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAG 120
consensus_4273#0 ACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTG 94
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 ACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTG 180
consensus_4273#0 CTCAAAACACGGAGGAAATT-GAAAAGACCCTACAGAAACTGG-TATCACTG--ACGCTC 150
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 CTCAAAACACGGAGGAAATTTGAAAAGACCCTACAGAAACTGGGTATCACCGGGACGCTC 240
consensus_4273#0 TGGCAAAGTACGTGAA-CGAGTTTGCCACCATGAG-CGAGGAAAATGTGTTGG-ACAAG- 206
consensus_4273#2 ----------CGTGAA-CGAGTGCGCCACCATGAG-CGAGGAAAATGTGTGGG-ACAAG- 46
consensus_4273#1 TGGGCAAGTACGTGAAACGAGTTTGCCACCATNAGGCGAGGAAAATGTGTTGGGACAAGG 300
****** ***** ******** ** ************** ** *****
consensus_4273#0 ATGAAAAACAGTCCGG-AATTTGTGCA-GTGTGCG-TCATGG-AGCG-AAATTCTC--GA 259
consensus_4273#2 ATGAAAAACAGTCCGG-AATAAGTGCA-GTGTGCG-TCAGGG-AGCG-AAATACTC--GA 99
consensus_4273#1 ATGAAAAACAGTCCGGGAATTTGTGCAAGTGTGCGGTCATGGGAGCGGAAATTCTTCGGA 360
**************** *** ***** ******* *** ** **** **** ** **
consensus_4273#0 CTCGG-TCGGG-----TTTCGCGAGACGTGCAACAACGAGCT-ACCGC--TGGCGCTGCA 310
consensus_4273#2 CACGG-TCGGG-----TGCCGCGAGACGTGCAACAACGAGCT-ACCGC--TGGCGCTGCA 150
consensus_4273#1 CTCGGGTCGGGGTTTCCGCCGAAGAACGTGCAACAACGAGCTTACCGGCGTGGCGCTTNN 420
* *** ***** ** ***************** **** *******
consensus_4273#0 AA--TCATTG-CTCACACGGAGCAG-----TTTCCCAAACC---GGAAAATGCA--AAC- 356
consensus_4273#2 AA--TCATAG-CTCACACGGAGCAG-----TACCCCAAACC---GGAAAATGCA--AAC- 196
consensus_4273#1 AAGATCATTGGTTCACAACGGGAAGCAAGTTTTCCCAAAACCCGGGAAAATGCNCAAACC 480
** **** * ***** * * ** * ****** * ********* ***
consensus_4273#0 -GGTGTTGATTTTCAGCTG---CTGTATCTGAA----CCTGGCCAGCATGATGATGGGGC 408
consensus_4273#2 -GGTGTGGAAACGCAGCTG---CTGTATCTGAA----CCTGGCCAGCATGATGATGGGGC 248
consensus_4273#1 GGGTGTTGATTTTCAGCTGGCNTTGTATCTNGAAACCCTGGGCCAGGCGAGTGATTGAAT 540
***** ** ****** ******* * * ****** **** *
consensus_4273#0 AACCG---ATACGGGTTATGAATCAAAGTACTCAGGATGCCCTGAAGAAGGTGTATGAGG 465
consensus_4273#2 AACCG---ATACGGGTGATGAAACAAAGTACTCAGGAA---------------------- 283
consensus_4273#1 TGGTGCAAACCGGAGTACGGGGTTATGGAACTCAACTGTAACTCAGGAGTGNCCCTNGAA 600
* * * ** * * * *****
consensus_4273#0 AAACAGTGTTGCAAACGTCCAGGGCGGATCAAAAGGAAGAGATAGCCATACTACACGAGA 525
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 GAACGGTGGTATGAGGAAACAGTGTTTGCCAAACAGT----------------------- 637
consensus_4273#0 CACTGAAAACGATGCGCAATCCGGTACAGTCTAATGAACAGAATAGAATTGTGGACGACT 585
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 TGAGGCGGTTGTTTGCCGACCCCAACATAAACCCTTTCCGCCTTCCGATTAATCAGATAT 645
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 GTTCGAATAACCCGTAAGCATAAAGAATAACACGCTGGTAGAACTTTTTCGGAAATAAAC 705
consensus_4273#2 ------------------------------------------------------------
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 ATGCA 710
consensus_4273#2 -----
consensus_4273#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||