cluster # 4283

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Anopheles gambiae
cluster # 4283 cluster # 4283 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4283#0 length = 687 sequences # 1

consensus_4283#1 length = 618 sequences # 1
consensus_4283#2 length = 530 sequences # 1

consensusID : consensus_4283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCCGCATCAAAGAACAGTGCAAAGCAGTTTTTCCCGTGCGCTCAAAGTTGGCACAGCAATCCTAGCAGCAGCAGCATCAGCAGCATCAGCAGCTCCTACGAATTTGTGTGTGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATCTCGGCGAGCAGCAGCACCAGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAATACCCATCGTCCATCGACTAAAAGGAAAGAGTGAAGGACCGACAGAGAGAGTACGTCTGTGTGTGGCAAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTTTGCTCTTCCTATTGCCTCTGCCTCCCCTGTGCGTGTGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAACGGCCCGCGTGCACTGCCGTGCGTGTTAGTACAAAAAAGTAGCGCAAGCAGTAGT]

[+] EMBL BM634255             [CCGCCGCATCAAAGAACAGTGCAAAGCAGTTTTTCCCGTGCGCTCAAAGTTGGCACAGCAATCCTAGCAGCAGCAGCATCAGCAGCATCAGCAGCTCCTACGAATTTGTGTGTGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATCTCGGCGAGCAGCAGCACCAGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAATACCCATCGTCCATCGACTAAAAGGAAAGAGTGAAGGACCGACAGAGAGAGTACGTCTGTGTGTGGCAAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTTTGCTCTTCCTATTGCCTCTGCCTCCCCTGTGCGTGTGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAACGGCCCGCGTGCACTGCCGTGCGTGTTAGTACAAAAAAGTAGCGCAAGCAGTAGT]




>consensus_4283#0
CCGCCGCATCAAAGAACAGTGCAAAGCAGTTTTTCCCGTGCGCTCAAAGTTGGCACAGCA
ATCCTAGCAGCAGCAGCATCAGCAGCATCAGCAGCTCCTACGAATTTGTGTGTGTGATTC
TCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATC
TCGGCGAGCAGCAGCACCAGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGG
GTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGAT
TTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATA
CATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAATACCCATCGTCCATC
GACTAAAAGGAAAGAGTGAAGGACCGACAGAGAGAGTACGTCTGTGTGTGGCAAACGCGG
CAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGC
GCGCAAGTGTGTGTTTTTTTTTGCTCTTCCTATTGCCTCTGCCTCCCCTGTGCGTGTGTG
CATCTTCTTCTCAGCTGTAGCGAAACGTCAAACGGCCCGCGTGCACTGCCGTGCGTGTTA
GTACAAAAAAGTAGCGCAAGCAGTAGT

consensusID : consensus_4283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGGAACGAACGTGTACAATAACTAAAAGTTCAGAGCGCAGAGCGAATTAATTCCGACCCTTGGCACAGCAATCCTAGCAGCAGCAGCAGCAGCATCAGCAGCTCCTACGAATTTGTGTGTGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGAGTCCAATCGTGTATGATTATCTCCGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAAAGAGACAAGGAGCGAGAATACCCATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTACGTCTGTTTGTGGTGAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTGCTCTTCCTATTGCCTCTGCCTCCCCTGTGCGTGTGTGCATCTTCTT]

[+] EMBL BM620884             [CCGGAACGAACGTGTACAATAACTAAAAGTTCAGAGCGCAGAGCGAATTAATTCCGACCCTTGGCACAGCAATCCTAGCAGCAGCAGCAGCAGCATCAGCAGCTCCTACGAATTTGTGTGTGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGAGTCCAATCGTGTATGATTATCTCCGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAAAGAGACAAGGAGCGAGAATACCCATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTACGTCTGTTTGTGGTGAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTGCTCTTCCTATTGCCTCTGCCTCCCCTGTGCGTGTGTGCATCTTCTT]




>consensus_4283#1
CCGGAACGAACGTGTACAATAACTAAAAGTTCAGAGCGCAGAGCGAATTAATTCCGACCC
TTGGCACAGCAATCCTAGCAGCAGCAGCAGCAGCATCAGCAGCTCCTACGAATTTGTGTG
TGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGA
TACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCATAG
CGTGCGCGCGAGTCCAATCGTGTATGATTATCTCCGGTCCGTCCGTGAAAGTACCCCCAG
ACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTG
GCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAAAGAGACAAGGAGCGAGAATACC
CATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTACGTCTGTTTGT
GGTGAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACA
AAGTGTATTGCGCGCAAGTGTGTGTTTTTTTGCTCTTCCTATTGCCTCTGCCTCCCCTGT
GCGTGTGTGCATCTTCTT

consensusID : consensus_4283#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [CCGCCCACGCGTCCGAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAATACCCATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTCCGTCTGTGTGTGGCAAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTGCTCTTCCTATTGCCTCCGCCTCCCCTGTGCGTGTGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAGGCAGCCCGCGTGCA]

[+] EMBL BM577995             [CCGCCCACGCGTCCGAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGCGCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCCCAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAATACCCATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTCCGTCTGTGTGTGGCAAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTGCTCTTCCTATTGCCTCCGCCTCCCCTGTGCGTGTGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAGGCAGCCCGCGTGCA]




>consensus_4283#2
CCGCCCACGCGTCCGAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAAAGATACTT
ATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCATAGCGTGC
GCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCCCAGACACA
GACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTACTGGCACG
GAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAATACCCATCG
TCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTCCGTCTGTGTGTGGCAA
ACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTGACAAAGTG
TATTGCGCGCAAGTGTGTGTTTTTTTGCTCTTCCTATTGCCTCCGCCTCCCCTGTGCGTG
TGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAGGCAGCCCGCGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4283#0      ----------CCGCCGCATCAAAGAACAGTGCAAAGCAGTTTTTCCCGTGCGCTCAAAG- 49
consensus_4283#2      ------------------------------------------------------------
consensus_4283#1      CCGGAACGAACGTGTACAATAACTAAAAGTTCAGAGCGCAGAGCGAATTAATTCCGACCC 60
                                                                                  

consensus_4283#0      TTGGCACAGCAATCCTAGCAGCAGCAGCATCAGCAGCATCAGCAGCTCCTACGAATTTGT 109
consensus_4283#2      ------------------------------------------------------------
consensus_4283#1      TTGGCACAGCAATCCTAGCAGCAGCAGC---AGCAGCATCAGCAGCTCCTACGAATTTGT 117
                                                                                  

consensus_4283#0      GTGTGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAA 169
consensus_4283#2      -------CCGCCCACGCGTCCGA-GCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAA 52
consensus_4283#1      GTGTGTGATTCTCAAGTGAAAGAAGCAGAATAAGGGCAGAAGCAATTCCTTCTGTCACAA 177
                                * ** * *   ** ************************************

consensus_4283#0      AGATACTTATCTCGGCGAGCAGCAGCACCAGC---AGCAGCACCAGCAGTTTCAAGGCCA 226
consensus_4283#2      AGATACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCA 112
consensus_4283#1      AGATACTTATCTCGGCGAGCAGCAGCACCAGCGGCAGCAGCACCAGCAGTTTCAAGGCCA 237
                      ********************************   *************************

consensus_4283#0      TAGCGTGCGCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCC 286
consensus_4283#2      TAGCGTGCGCGCGGGTCCAATCGTGTATGATTATCTCTGGTCCGTCCGTGAAAGTACCCC 172
consensus_4283#1      TAGCGTGCGCGCGAGTCCAATCGTGTATGATTATCTCCGGTCCGTCCGTGAAAGTACCCC 297
                      ************* *********************** **********************

consensus_4283#0      CAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTA 346
consensus_4283#2      CAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTA 232
consensus_4283#1      CAGACACAGACGATTTACACAGCGCGACGACGGCAGCGGCAGCGACGGCAAGTGTTACTA 357
                      ************************************************************

consensus_4283#0      CTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAAT 406
consensus_4283#2      CTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAGAGAGACAAGGAGCGAGAAT 292
consensus_4283#1      CTGGCACGGAGATACATACGGCGTGAACCGCAGAGAGCGAAAGAGACAAGGAGCGAGAAT 417
                      **************************************** *******************

consensus_4283#0      ACCCATCGTCCATCGACTAAAAGGAAAGAGTGAAGGACCGACAGAGAGAGTACGTCTGTG 466
consensus_4283#2      ACCCATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTCCGTCTGTG 352
consensus_4283#1      ACCCATCGTCCATCGACTAAAAGGAAGGAGTGAAGGAACGACAGAGAGAGTACGTCTGTT 477
                      ************************** ********** ************* ******* 

consensus_4283#0      TGTGGCAAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTG 526
consensus_4283#2      TGTGGCAAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTG 412
consensus_4283#1      TGTGGTGAACGCGGCAAATATCGAGCGGCAATCAGCAGCAGTGTGTGGGGTGCCCGTCTG 537
                      *****  *****************************************************

consensus_4283#0      ACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTTTTGCTCTTCCTATTGCCTCTGCCTCC 586
consensus_4283#2      ACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTT--GCTCTTCCTATTGCCTCCGCCTCC 470
consensus_4283#1      ACAAAGTGTATTGCGCGCAAGTGTGTGTTTTTTT--GCTCTTCCTATTGCCTCTGCCTCC 595
                      **********************************  ***************** ******

consensus_4283#0      CCTGTGCGTGTGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAA-CGGCCCGCGTGCA 645
consensus_4283#2      CCTGTGCGTGTGTGCATCTTCTTCTCAGCTGTAGCGAAACGTCAAGGCAGCCCGCGTGCA 530
consensus_4283#1      CCTGTGCGTGTGTGCATCTTCTT------------------------------------- 618
                      ***********************                                     

consensus_4283#0      CTGCCGTGCGTGTTAGTACAAAAAAGTAGCGCAAGCAGTAGT 687
consensus_4283#2      ------------------------------------------
consensus_4283#1      ------------------------------------------