cluster # 4290

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Anopheles gambiae
cluster # 4290 cluster # 4290 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4290#0 length = 841 sequences # 2

consensus_4290#1 length = 586 sequences # 1

consensusID : consensus_4290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 841
fasta sequence

                              [CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTTAAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACAAGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGAAAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATGAAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGC---GCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACTCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGTACGANGAGCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGGTGGAAAGC]

[+] EMBL BM588780             [CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTTAAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACAAGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGAAAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATGAAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGC   GCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACTCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACGATCTGGCCCTCATTACGG                                                                                                                                                                          ]
[+] EMBL BX622976             [                                      CATTCCGCACTAATTACGCGTTAAAATGGATGCAAACACATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACAAGTGCTGCCGATTTGGCCAACGATCAGAAGCGCCGAAGCTCTTCCCGTTCGATCAAAAGAAAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATGAAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGG ACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGTACGANGAGCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGGTGGAAAGC]




>consensus_4290#0
CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTT
AAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACA
AGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGA
AAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATG
AAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGCGCTGCT
GCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATC
GGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCT
CTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACTCCCACTACCGTAACG
CTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAAC
GCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGC
GCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACGATCTGGC
CCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTT
TAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGTACGANGA
GCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGGTGGAAAG
C

consensusID : consensus_4290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [CACGAGGTTNATGAAAGCGGTAGCCGGAAGATCCGCACCTCTCCCAATCGATGACGCCACTCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCTGTCTGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTGACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGCTCGCTGCTGTACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGCAT]

[+] EMBL AL930057             [CACGAGGTTNATGAAAGCGGTAGCCGGAAGATCCGCACCTCTCCCAATCGATGACGCCACTCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCTGTCTGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTGACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGCTCGCTGCTGTACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGCAT]




>consensus_4290#1
CACGAGGTTNATGAAAGCGGTAGCCGGAAGATCCGCACCTCTCCCAATCGATGACGCCAC
TCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCG
TCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCT
GTCTGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTG
ACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTG
CAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAG
CGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAG
CCGATGGACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTG
CACCGCGGGACCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGC
TCGCTGCTGTACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4290#0      CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTT 60
consensus_4290#1      ------------------------------------------------------------
                                                                                  

consensus_4290#0      AAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACA 120
consensus_4290#1      ------------------------------------------------------------
                                                                                  

consensus_4290#0      AGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGA 180
consensus_4290#1      ------------------------------------------------------------
                                                                                  

consensus_4290#0      AAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATG 240
consensus_4290#1      -----------------------------------------------CACGAGGTTNATG 13
                                                                      *    *   ***

consensus_4290#0      AAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGCGCTGCT 300
consensus_4290#1      AAAGCGGTAGCCGGAAGATCC-GCACC-TCTCCCAATCGATGACGCCACTCGGCGCTGCT 71
                      ********************* ***** ********************************

consensus_4290#0      GCTGCTGCTGCT---CCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACA 357
consensus_4290#1      GCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACA 131
                      ************   *********************************************

consensus_4290#0      ATCGGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCC-GTC-GCGCCTG 415
consensus_4290#1      ATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCTGTCTGCGCCTG 191
                      ********************** ************************* *** *******

consensus_4290#0      CTGCTCTGCCACCAGTAGCTCCACCCGCAACACC-GCTTCCACCGCC-GACTCCCACTAC 473
consensus_4290#1      CTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTGACCCCCACTAC 251
                      ********************************** ************ *** ********

consensus_4290#0      CGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAA 533
consensus_4290#1      CGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAA 311
                      ************************************************************

consensus_4290#0      CTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAA 593
consensus_4290#1      CTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAA 371
                      ************************************************************

consensus_4290#0      AAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACG 653
consensus_4290#1      AAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGA-CG 430
                      ********************************************************* **

consensus_4290#0      ATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGA 713
consensus_4290#1      ATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGA 490
                      ************************************************************

consensus_4290#0      CCAAGTTTAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGT 773
consensus_4290#1      CCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGCTCGCTGCTGT 550
                      ********************* ********************* ****************

consensus_4290#0      ACGANGAGCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGG 833
consensus_4290#1      ACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGC-AT----------------------- 586
                      **** ***************************** **                       

consensus_4290#0      TGGAAAGC 841
consensus_4290#1      --------