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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 982 fasta sequence
[GAAGACGAGGAGGAGGAGGAGGACGATTTGAACAATGACAATGAGGGGCAACCGGTGTCCAGCAGGAAGCGCATCAAGAAAAGCAGAAAAGATAAGAAGCATAAGCGAAACAAAAAACTAAAAAAGCGCAAGAAAAAATATCGCACCAAGTCAATATCGAGCATTGAGACGATCTCGGAGAGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGAGCTGGTAGTGGTGAAGGTAGTAAATCTTACACTCCTGTTCACAACGACACCAGCCTTACGCCCGTGTCACCAGGAACTCCACCACTGCTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGCCGTAGTCCAATTGAGCGTGATTGTGACCACGATCGCGAACGGGAACGGGAACGTGATCCACGGGATCGAGACCGTTCAGCAAATGCTGGCGGAAGCACCACTGGCCGCAAACTGTATATTACTTCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGATCGTACGCTGCCACAGAACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTTGCGCCACAGANGAAGCAGCAGCCATCGAGCAAATAGTCGGCGTCGCAGTCAATCAAACGATCGGAGGTACAGCTCCAGGCGAACGCCTTCTCCAAACGAACGTCACAAACCACACACTCCACCACCCACGAAACGTCGGCGAGACAGATCTCCGCCCGAGAAGGACTATTATCGGAAAACGGATAGCCGGAGTTACAGTAAACGAGAGAGAGACTGGGATGATCGTCGCGGCAGTGAAGCCAGCAAGCGTTATGGAAGAACTNCAAGTCCCAATAGCAATCGCCGNTCTCGACGGTCACCTTCGCTTACCATAACGAGCAGGTCTAGATCATCGCGCAGGGGAN]
[+] EMBL BX627917 [GAAGACGAGGAGGAGGAGGAGGACGATTTGAACAATGACAATGAGGGGCAACCGGTGTCCAGCAGGAAGCGCATCAAGAAAAGCAGAAAAGATAAGAAGCATAAGCGAAACAAAAAACTAAAAAAGCGCAAGAAAAAATATCGCACCAAGTCAATATCGAGCATTGAGACGATCTCGGAGAGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGAGCTGGTAGTGGTGAAGGTAGTAAATCTTACACTCCTGTTCACAACGACACCAGCCTTACGCCCGTGTCACCAGGAACTCCACCACTGCTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGCCGTAGTCCAATTGAGCGTGATTGTGACCACGATCGCGAACGGGAACGGGAACGTGATCCACGGGATCGAGACCGTTCAGCAAATGCTGGCGGAAGCACCACTGGCCGCAAACTGTATATTACTTCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGATCGTACGCTGCCACAGAACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTTGCGCCACAGANGAAGCAGCAGCCATCG ]
[+] EMBL BX623208 [ ATCTCGGAGAGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGAGCTGGTAGTGGTGAAGGTAGTAAATCTTACACTCCTGTTCACAACGACACCAGCCTTACGCCCGTGTCACCAGGAACTCCACCACTGCTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGCCGTAGTCCAATTGAGCGTGATTGTGACCACGATCGCGAACGGGAACGTGAACGTGATCCACGGGATCGAGACCGTTCAGCAAATGCTGGCGGAAGCACCACTGGCCGCAAACTGTATATTACTTCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGATCGTACACTGCCGCAGAACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTTGCGCCACAGAGGAAGCAGCAGCCATCGAGCAAATAGTCGGCGTCGCAGTCAATCAAACGATCGGAGGTACAGCTCCAGGCGAACGCCTTCTCCAAACGAACGTCACAAACCACACACTCCACCACCCACGAAACGTCGGCGAGACAGATCTCCGCCCGAGAAGGACTATTATCGGAAAACGGATAGCCGGAGTTACAGTAAACGAGAGAGAGACTGGGATGATCGTCGCGGCAGTGAAGCCAGCAAGCGTTATGGAAGAACTNCAAGTCCCAATAGCAATCGCCGNTCTCGACGGTCACCTTCGCTTACCATAACGAGCAGGTCTAGATCATCGCGCAGGGGAN]
consensusID : consensus_4291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CAGAATCGCGCACGAGNGGTAGTAAATCCTTACACTCCGTGTTTCACAAACGACACCAGTCCTTACGCCCGTGATCACCAGGAAGCTCCACCACTGCTTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGGTCGTAGTCCAATTGAGCGTAGATTGTGACCACGATCGCGAACGGGAACGGGAACGTTGATCCACGGGGATCGGAGAACCGTTTCAAGCGAAATGCTAGGGCGGAAGNCACCCACTGGNCGGAAGACTTGTNTATTTACCTTTCTTTCAAACCTCCACACTACCCTGNCTGGTTCTGACCATAGGCAATATGAGACAACACGGACTTTCGGTCTATCTTTAACCCAATGAATCCGTACCGNCCTTGGCNAACAAGGAAACCAACNTGAAAGGTNCTCCCGAATTTTGGAATTCCTGTGGGAAATTAAGCGCNACCGGNGAACGGGCCCTTGGATTTGGTTTATTGGCCCGGCCGCCANGCTTAANGAAGGGGGAACAAGAGCCCAAGGCGGAAGTTCGCACNGAGTTCACGTAAGGGCCAACACAGATTTTAAGGNTTCCGGGGACCGGTTNCTGTGCGAGGTCCAAGGTGTCCACN]
[+] EMBL BX468838 [CAGAATCGCGCACGAGNGGTAGTAAATCCTTACACTCCGTGTTTCACAAACGACACCAGTCCTTACGCCCGTGATCACCAGGAAGCTCCACCACTGCTTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGGTCGTAGTCCAATTGAGCGTAGATTGTGACCACGATCGCGAACGGGAACGGGAACGTTGATCCACGGGGATCGGAGAACCGTTTCAAGCGAAATGCTAGGGCGGAAGNCACCCACTGGNCGGAAGACTTGTNTATTTACCTTTCTTTCAAACCTCCACACTACCCTGNCTGGTTCTGACCATAGGCAATATGAGACAACACGGACTTTCGGTCTATCTTTAACCCAATGAATCCGTACCGNCCTTGGCNAACAAGGAAACCAACNTGAAAGGTNCTCCCGAATTTTGGAATTCCTGTGGGAAATTAAGCGCNACCGGNGAACGGGCCCTTGGATTTGGTTTATTGGCCCGGCCGCCANGCTTAANGAAGGGGGAACAAGAGCCCAAGGCGGAAGTTCGCACNGAGTTCACGTAAGGGCCAACACAGATTTTAAGGNTTCCGGGGACCGGTTNCTGTGCGAGGTCCAAGGTGTCCACN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4291#0 GAAGACGAGGAGGAGGAGGAGGACGATTTGAACAATGACAATGAGGGGCAACCGGTGTCC 60
consensus_4291#1 ------------------------------------------------------------
consensus_4291#0 AGCAGGAAGCGCATCAAGAAAAGCAGAAAAGATAAGAAGCATAAGCGAAACAAAAAACTA 120
consensus_4291#1 ------------------------------------------------------------
consensus_4291#0 AAAAAGCGCAAGAAAAAATATCGCACCAAGTCAATATCGAGCATTGAGACGATCTCGGAG 180
consensus_4291#1 ------------------------------------------------------------
consensus_4291#0 AGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGA 240
consensus_4291#1 --------------------------------------------------------CAGA 4
***
consensus_4291#0 GCTGGTAGTGGTGAAGGTAGTAAATC-TTACACTCC-TGTT-CACAA-CGACACCAG-CC 295
consensus_4291#1 ATCGC--GCACGAGNGGTAGTAAATCCTTACACTCCGTGTTTCACAAACGACACCAGTCC 62
* * *********** ********* **** ***** ********* **
consensus_4291#0 TTACGCCCGTG-TCACCAGGAA-CTCCACCACTGCT-GGAACATCATTCTACGAGGCATT 352
consensus_4291#1 TTACGCCCGTGATCACCAGGAAGCTCCACCACTGCTTGGAACATCATTCTACGAGGCATT 122
*********** ********** ************* ***********************
consensus_4291#0 CGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAG-CCGTAGTCCAATTGAG 411
consensus_4291#1 CGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGGTCGTAGTCCAATTGAG 182
******************************************* ***************
consensus_4291#0 CGT-GATTGTGACCACGATCGCGAACGGGAACGGGAACGT-GATCCACGGG-ATCGAG-- 466
consensus_4291#1 CGTAGATTGTGACCACGATCGCGAACGGGAACGGGAACGTTGATCCACGGGGATCGGAGA 242
*** ************************************ ********** ****
consensus_4291#0 ACCGTTC--AGC-AAATGCT--GGCGGAAGCA--CCACTGGCCGCAAACTGTATATTACT 519
consensus_4291#1 ACCGTTTCAAGCGAAATGCTAGGGCGGAAGNCACCCACTGGNCGGAAGACTTGTNT-ATT 301
****** *** ******* ******** ******* ** ** * * * * *
consensus_4291#0 TCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGAT 579
consensus_4291#1 TACCTTTCTTTCAAACCTCC-----------------ACACTACCCTGNCTGGTTCTGAC 344
* ** ** *** ** * *** * ** ***
consensus_4291#0 CGTACGCTGCCACAGA-ACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTT 638
consensus_4291#1 CATAGGCAATATGAGACAACACGGACTTTCGGTCTATCTT--TAACCCAATGAATCCGTA 402
* ** ** *** * ***** * * ***** ** *** * * **
consensus_4291#0 GCGCCACAGANGAAGCAGCAGCCATCGAGCAAATAGTCGGCGTCGCAGTCAATCAAACG- 697
consensus_4291#1 CCGNCCTTGGCNAACAAGGAA--ACCAACNTGAAAGGTNCTCCCGAATTTTGGAATTCCT 460
** * * ** ** * * * * * ** ** * * * *
consensus_4291#0 ATCGGAGGTACAGCTCCA--GGCGAACGCCTTCTCCAAACGAACGTCACAAACCACACAC 755
consensus_4291#1 GTGGGAAATTAAGCGCNACCGGNGAACGGGCCCTTGGATTTGGT-TTATTGGCC-CGGCC 518
* *** * *** * * ** ***** ** * * * ** * *
consensus_4291#0 TCCACCACCCACGAAACGTCGGCGAGACAGATCTCCGCCCGAGAAGGACTATTATCGGAA 815
consensus_4291#1 GCCANGCTTAANGAAGGGGGAACAAGA---------GCCCAAGGCGGAA-GTTCGCACNG 568
*** * *** * * *** **** ** *** ** *
consensus_4291#0 AACGGATAGCCGGAGTTACAGTAAACGAGAGAGAGACTGGGATGATCGTCGCGGCAGTGA 875
consensus_4291#1 AGTTCAC-GTAAGGGCCAACACAGATTTTAAGGNTTCCGGG--GACCGGTTNCTGTGCGA 625
* * * * * * * * * * * *** ** ** * **
consensus_4291#0 AGCCAGCAAGCGTTATGGAAGAACTNCAAGTCCCAATAGCAATCGCCGNTCTCGACGGTC 935
consensus_4291#1 GGTCCA-AGGTGTCCACN------------------------------------------ 642
* * * * **
consensus_4291#0 ACCTTCGCTTACCATAACGAGCAGGTCTAGATCATCGCGCAGGGGAN 982
consensus_4291#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||